Sequence
atgc intronic sequence ATGC exonic sequenceTTCTCTCTTGTCAGTTGCGCAGCGTTGTCCACCAAACTTCACTGGTGCTGATATTTACGCGCTGTGTGCGGATGCATGGTTTCATGCAGCAAAGCGATCAgtgagtatttctgccgacccgttacgccatatgttgggctcttcctagccttgctccgttgatcttgcgtgtggtattttttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G445617_T01 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os04g52690.1 (Oryza sativa), 5'ss of exon 14
TTCTCTCTTGTCAGTTGCGCAGCGTTGTCCACCAAACTTCACTGGTGCTGATATTTACGCGCTGTGTGCGGATGCATGGTTTCATGCAGCAAAGCGATCAgtgagtatttctgccgacccgttacgccatatgttgggctcttcctagccttgctccgttgatcttgcgtgtggtattttttag
||||||||||||| |||| |||| ||||| |||||||| || |||||||||||||| ||| | || || || ||||||| |||||| || ||| | ||||||| || | || | | | | || || ||| | | |||||| |||| ||| | ||||||||
TTCTCTCTTGTCAATTGCTCAGCAATGTCCTCCAAACTTTACCGGTGCTGATATTTATGCGTTATGCGCAGACGCATGGTATCATGCTGCTAAGAACTTGgtgagtagcag-gcagttccttcccacttcac--tgaccttttcttgtctttgctctgttggacttacacctggtatttcaag-
upper sequence: GRMZM2G445617_T01 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA19G39580.1 (Glycine max), 5'ss of exon 14
TTCTCTCTTGTCAGTTGCGCAGCGTTGTCCACCAAACTTCACTGGTGCTGATATTTACGCGCTGTGTGCGGATGCATGGTTTCATGCAGCAAAGCGATCAgtgagtatttctgcc-------gacccgt---tacgccatatg---ttgggctcttcctagccttgctccgttgatcttgcgtg-tggtattttttag---
|| || | || | || | ||||||||||||||||||||||| || || || || ||||||| ||||| ||||| ||||| |||||||| ||| ||| | | |||| | ||| |||| || | | | |||| || | | | |||| || | || | |
CTCACTTTACTCCATAGCAAAAAAATGTCCACCAAACTTCACTGGTGCAGACATGTATGCTTTGTGTGCAGATGCTTGGTTCCATGCTGCAAAGCGCAAAgtaagtttgaccaggatcacaggacctatgattactttgtatgcattttgtttgatactagatctgttatgat-atctgaaatgatagtggactatcaattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211511143|gb|FL039440.1|FL039440EST: ATATTTACGCGCTGTGTGCGGATGCATGGTTTCATGCAGCAAAGCGATCA GTTGAAACATTCGAAACCGATCCTTCA
genomic: ATATTTACGCGCTGTGTGCGGATGCATGGTTTCATGCAGCAAAGCGATCAgtgagtattt ... tattttttagGTTGAAACATTCGAAATCGATCCTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTCTCTTGTCAGTTGCGCAGCGTTGTCCACCAAACTTCACTGGTGCTGATATTTACGCGCTGTGTGCGGATGCATGGTTTCATGCAGCAAAGCGATCAgtgagtatttctgccgacccgttacgccatatgttgggctcttcctagccttgctccgttgatcttgcgtgtggtattttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG