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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGGGGGAGTATTGCTTGCTATATGTACAAATGATTTCATTTGTTTTTATGACTGGGCAGAGTGCAGGTTGATACGTCGAATTGACGTGAATGTAAAAgtgagtcgttacttttgcttcagcaatggatacccatcatgtgtttttactcttttttgccttaacgccactggaattgattactcttgtgcctggtgtag

Basic information

species Zea mays
transcript GRMZM2G443953_T03
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G443953_T03 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 13
ATATGGGGGAGTATTGCTTGCTATATGTACAAATGATTTCATTTGTTTTTATGACTGGGCAGAGTGCAGGTTGATACGTCGAATTGACGTGAATGTAAAAgtgagtcgttacttttgcttcagcaatggatacccatcatgtgtttttactcttttttgccttaacgccactggaattgattactcttgtgcctggtgtag
|| ||| ||     |  | || || ||  ||||||||||||| || ||||| || ||||  ||||| |||||||| ||||| ||||| || ||||| ||||| |||  || | |  | |         |  | |     | || ||||| |  || || |  |  |     |    |  |||  ||||||| | |      
ATTTGGCGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTACGATTGGGTTGAGTGTAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcatgaggt---------ggcatcagctttctgcttttatttcttcttactgtttcttatttttgttaaatttttcttgtgtcag------

upper sequence: GRMZM2G443953_T03 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 2
ATATGGGGGAGTATTGCTTGCTATATGTACAAATGATTTCATTTGTTTTTATGACTGGGCAGAGTGCAGGTTGATACGTCGAATTGACGTGAATGTAAAAgtgagtcgttacttttgctt-cagcaatggatacccatcatgtgtttttactcttttttgccttaacgccactggaattgattactcttgtgcctggtgtag
|| ||| ||     |  | || || ||  ||||||||||||| || |||||||| ||||| || ||||||||||| ||||| ||||| || ||||| ||||| |||  || | |  | |  || ||        |  | || | || ||||| ||| |||  ||||      |  ||||      ||||||| | |      
ATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGGTTGATTCGTCGTATTGATGTTAATGTTAAAgtaagtgcttgcatgaggtgacatcagctttctgcttttatttcttcttactgtttcttg--ttaattttgttaaaatt-----ttcttgtgtcag------

upper sequence: GRMZM2G443953_T03 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 13
ATATGGGGGAGTATTGCTTGCTATATGTACAAATGATTTCATTTGTTTTTATGACTGGGCAGAGTGCAGGTTGATACGTCGAATTGACGTGAATGTAAAAgtgagtcgttacttttgcttcagcaatggatacccatcatgtgtttttactcttttttgcc--ttaacgccactggaattgattactcttgtgcctggtgtag
|| ||| ||     | || || || ||  | || |||||||| || |||||||||||||| || |||||||||||   ||| ||||| || ||||| ||||| |||       |||| ||  |  |    ||   |||   | ||||   |||| ||      ||||    | |     | |||| ||||||| | |      
ATTTGGTGGCACTCTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaagta-----ctttgattaggtgacatttagttatctgctcttttccttcttattcattgtttaatataattttg--ttattaatcttgtgtcag------

upper sequence: GRMZM2G443953_T03 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 13
ATATGGGGGAGTATTGCTTGCTATATGTACAAATGATTTCATTTGTTTTTATGACTGGGCAGAGTGCAGGTTGATACGTCGAATTGACGTGAATGTAAAAgtgagtcgttacttttgcttcagcaatggatacccatcatgtgtttttactcttttttgcc-ttaacgccactggaattgattactcttgtgcctggtgtag
||  || ||    || || || || ||  | || |||||||| || |||||||||||||| || |||||||||||   ||| ||||| || ||||| ||||| |||       |||| ||  |  |    ||   |||   | ||||   |||| || |   || |    | |    ||  ||| ||||||| | |      
ATTCGGTGGCACTTTACTGGCGATGTGCTCCAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATCTATCGCATTGATGTCAATGTGAAAgtaagta-----ctttgattaggtgacatctagttatctgctcttttccttcttattcgttgtttaatttaattttgttattta-tcttgtgtcag------

upper sequence: GRMZM2G443953_T03 (Zea mays), 5'ss of exon 14
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 13
ATATGGGGGAGTATTGCTTGCTATATGTACAAATGATTTCATTTGTTTTTATGACTGGGCAGAGTGCAGGTTGATACGTCGAATTGACGTGAATGTAAAAgtgagtcgttact---tttgcttcagcaatggatacccatcatgtgtttttactcttttttgccttaacgccactggaattgattactcttgtgcctggtgtag
 ||||| || | | | || || |||||  ||||||| ||||||||||||||||||||||| |||||||||||||| || || ||||| || ||||| || |   ||  | |      || ||||| ||||    |    |           |  ||  |    | |  |       |  || | || |   |            
TTATGGAGGGGCACTTCTGGCGATATGCTCAAATGACTTCATTTGTTTTTATGACTGGGCTGAGTGCAGGTTGATTCGGCGGATTGATGTCAATGTCAAGgcatgttctcaaaaagcttacttca-caattaccaggttttggccacagagaaactaatagttcatttctttgggtggtttcaatatttcag------------

upper sequence: GRMZM2G443953_T03 (Zea mays), 5'ss of exon 14
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 13
ATATGGGGGAGTATTGCTTGCTATATGTACAAATGATTTCATTTGTTTTTATGACTGGGCAGAGTGCAGGTTGATACGTCGAATTGACGTGAATGTAAAAgtgagtcgttacttttgcttcagcaatggatacccatcatgtgtttttactcttttttgccttaacgccactggaattgattactcttgtgcctggtgtag-----------
 | ||| |||   ||  | || || ||  |||||||||| |||||||| ||||||||||| || |||||| |||| || |||||||| || ||||| ||||| ||   | ||   || |       ||| ||||       |||||| |  |     |||   ||           ||  ||  |  | | | |  | |             
TTTTGGAGGAACTTTATTGGCAATGTGCTCAAATGATTTTATTTGTTTCTATGACTGGGCTGAATGCAGGCTGATTCGACGAATTGATGTTAATGTCAAAgtaagcactaaca--tgatggcctgttggctaccgtggtattgttttcatgccacactgcaggaattgattaaatgttccttttttcttttctttttttttcactatttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481629|gb|EY254461.1|EY254461
EST:     GGCAGAGTGCAGGTTGATACGTCGAATTGACGTGAATGTAAAA                         AATGTATATTGGGCTGACAGTGGTGATTTGGTGACAATAGCAAGCGATTCG
genomic: GGCAGAGTGCAGGTTGATACGTCGAATTGACGTGAATGTAAAAgtgagtcgtt ... cctggtgtagAATGTATATTGGGCTGACAGTGGTGATTTGGTGACAATAGCAAGCGATTCG
EST: gi|160481610|gb|EY254442.1|EY254442
EST:     ATGACTGGGCAGAGTGCAGGTTGATACGTCGAATTGACGTGAATGTAAAA                         AATGTATATTGGGCTGACAGTGGTGATTTGGTGACAATAGCAAGCGATTCG
genomic: ATGACTGGGCAGAGTGCAGGTTGATACGTCGAATTGACGTGAATGTAAAAgtgagtcgtt ... cctggtgtagAATGTATATTGGGCTGACAGTGGTGATTTGGTGACAATAGCAAGCGATTCG