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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTCGACTTCGCTCTCAAACTCGAGGCTGCTTGCGTTGAGACCGTGGAGTCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtgtgctatgcttctcagcttttgaccttttgtcatctacattgtattttgttgcgcgatcttttcccagcgcctgattagcgtctgacctcgtcttaatctgcag

Basic information

species Zea mays
transcript GRMZM2G432128_T01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G432128_T01 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os01g46610.1 (Oryza sativa), 5'ss of exon 14
TACTCGACTTCGCTCTCAAACTCGAGGCTGCTTGCGTTGAGACCGTGGAGTCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg-tgctatgcttctcagcttttgaccttttgtcat-ctacattgta---ttttgttgc-gcgatcttttcccagcgcctgattagcgtctgacctcgtcttaatctgcag
| || ||||| || || ||||| || |||||||||||||  |||||||| || ||||||||||| ||||| || ||  ||||| | || || ||||| | || ||   || || |    || |   ||  ||  |||  ||  |  |    || |   |||||| ||   |||       |     ||| |||   | |   |   | || |  || ||
TTCTTGACTTTGCACTAAAACTTGAAGCTGCTTGCGTTGGAACCGTGGAATCTGGGAAGATGACCAAAGACCTTGCTCTTCTTATTCACGGGTCTTCAAAgtatgttatgctgtttcagtttttgcctcatgcacttcagttgtgtttttctgcaaagttttgtagctatgataaaagaactcattctgtttaatttattttcct-ttttgacttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60342210|gb|DN209183.1|DN209183
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|213178508|gb|FM194011.1|FM194011
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|13198143|gb|BG354174.1|BG354174
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|211320314|gb|FL454033.1|FL454033
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|76286555|gb|DV026123.1|DV026123
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTTTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|148937600|gb|EC881790.2|EC881790
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|6194438|gb|AW146542.1|AW146542
EST:     ATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: ATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|60338834|gb|DN205807.1|DN205807
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|37377043|gb|CF625092.1|CF625092
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|60352624|gb|DN219597.1|DN219597
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|50338699|gb|CO533825.1|CO533825
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|116823985|gb|EC867562.1|EC867562
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|56382236|gb|CV984905.1|CV984905
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACGCCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|67010786|gb|CO439535.1|CO439535
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|211106971|gb|FL115258.1|FL115258
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|32912487|gb|CF017299.1|CF017299
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|28983617|gb|BQ538722.2|BQ538722
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|116821966|gb|EC865325.1|EC865325
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|40303174|gb|CK347561.1|CK347561
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|33092418|gb|CF052412.1|CF052412
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|6696062|gb|AW289170.1|AW289170
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|37377787|gb|CF625533.1|CF625533
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|213172317|gb|FM188421.1|FM188421
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CNNNNCGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|21891601|gb|BQ744814.1|BQ744814
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACCCCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|33091394|gb|CF051388.1|CF051388
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|5895722|gb|AW036968.1|AW036968
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCCCGAGAAGCCATTACCTGAACNCCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|32849367|gb|CD989048.1|CD989048
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|33098319|gb|CF058279.1|CF058279
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|161586535|gb|EY956172.1|EY956172
EST:     CGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAG
genomic: CGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAG
EST: gi|60358113|gb|DN225086.1|DN225086
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|67025371|gb|CO454120.1|CO454120
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|148957373|gb|EC903423.2|EC903423
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTTTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|74237579|gb|DT645493.1|DT645493
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|60346852|gb|DN213825.1|DN213825
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|21706316|gb|BQ635352.1|BQ635352
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|60347229|gb|DN214202.1|DN214202
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|1298626|gb|W21690.1|W21690
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAG--NN
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|67019645|gb|CO448394.1|CO448394
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACNACCGAG-AGTTCATCGACGCAGTCG
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAAC-ACCGAGGAGTTCATCGACGCAGTCG
EST: gi|8401314|gb|BE056948.1|BE056948
EST:     TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
EST: gi|113839300|gb|DW963255.1|DW963255
EST:     TTCTTGTCCATGGATCTTCCAG                         CGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC
genomic: TTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 44 (upstream exon), 49 (downstream exon)
Score: 186

TACTCGACTTCGCTCTCAAACTCGAGGCTGCTTGCGTTGAGACCGTGGAGTCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCTACTGAGCTCCGATCAAGACTGGGAGCCAACTGAGCCTACAAGAAACTT


Block sizes: 44 (upstream exon), 48 (downstream exon)
Score: 598

TACTCGACTTCGCTCTCAAACTCGAGGCTGCTTGCGTTGAGACCGTGGAGTCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCTACTGAGCTCCGATCAAGACTGGGAGCCAACTGAGCCTACAAGAAACTT


Block sizes: 44 (upstream exon), 49 (downstream exon)
Score: 360

TACTCGACTTCGCTCTCAAACTCGAGGCTGCTTGCGTTGAGACCGTGGAGTCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCTACTGAGCTCCGATCAAGACTGGGAGCCAACTGAGCCTACAAGAAACTT


Block sizes: 44 (upstream exon), 49 (downstream exon)
Score: 826

TACTCGACTTCGCTCTCAAACTCGAGGCTGCTTGCGTTGAGACCGTGGAGTCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtg ... taatctgcagCGTCACGAGAAGCCATTACCTGAACACCGAGGAGTTCATCGACGCAGTCGCTACTGAGCTCCGATCAAGACTGGGAGCCAACTGAGCCTACAAGAAACTT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACTCGACTTCGCTCTCAAACTCGAGGCTGCTTGCGTTGAGACCGTGGAGTCCGGGAAGATGACTAAAGATCTGGCGATTCTTGTCCATGGATCTTCCAGgtgtgcagtgtgctatgcttctcagcttttgaccttttgtcatctacattgtattttgttgcgcgatcttttcccagcgcctgattagcgtctgacctcgtcttaatctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA