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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATTGGGATGATTGGGTGAGGCTAAAGGAGGTACATGGACATCGGCAATTCATACGCCCGGAAATTTGTAGAACATACAATTTTGGCAAGCATgtatgttgctattcttcctcattttttaattaaaatactggcagttgctatagcaatatgaataccagtcatctgtcccaaatttcttcatgcaataaag...

Basic information

species Zea mays
transcript GRMZM2G426275_T01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G426275_T01 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os02g58590.1 (Oryza sativa), 5'ss of exon 14
TTATTGGGATGATTGGGTGAGGCTAAAGGAGGTACATGGACATCGGCAATTCATACGCCCGGAAATTTGTAGAACATACAATTTTGGCAAGCATgtatgttgctattcttcctcattttttaatta----------aaatactggcagttgct--atagcaatat-gaataccagtcatctgtcccaaatttcttca---tgcaataaag----------------------
|||||||||||| |||||||||||||| ||||||||  || | |||||||| || ||||||||| | || |||||||||||||||||| | |||||||||||      |     ||     |||||            | ||| | ||   ||  |||| ||| | |  |   || ||          ||  ||| |   | || |||                        
TTATTGGGATGACTGGGTGAGGCTAAAAGAGGTACACAGAGACCGGCAATTTATTCGCCCGGAAGTCTGCAGAACATACAATTTTGGCGAACATgtatgttggctacttcatcaatgcaaaaattaccacatttctgcacactagtagccactggatagtaatttagtctttgagccagtaagtatggatgacttgaatttacactaatagattttcatacctccttttcag

upper sequence: GRMZM2G426275_T01 (Zea mays), 5'ss of exon 14
lower sequence: AT4G38240.3 (Arabidopsis thaliana), 5'ss of exon 14
TTATTGGGATGATTGGGTGAGGCTAAAGGAGGTACATGGACATCGGCAATTCATACGCCCGGAAATTTGTAGAACATACAATTTTGGCAAGCATgtatgttgctattcttcctcattttttaattaaaatactggcagttgctatagcaatatgaataccagtcatctgtcccaaattt-cttcatgcaataaag----
                      ||||||||    |||  |   || |||||||| || |||||| | ||||||||||||||||||||  | |||||  ||  |   |  | ||    | |  || | | |  |   |||  || |     |   ||| |   | |  || || |  ||  || |||   |         
---------------------ACTAAAGGAAAACCATAAAGGCCGCCAATTCATTCGACCGGAAGTCTGTAGAACATACAATTTTGGTGAACATgttagtacccgattatgctatcctatatatcatagttttacaagt--ctgtttttgt---aatgctgttaaattgacctatgttcgctgcatatgacttctgctt

upper sequence: GRMZM2G426275_T01 (Zea mays), 5'ss of exon 14
lower sequence: AT4G38240.2 (Arabidopsis thaliana), 5'ss of exon 14
TTATTGGGATGATTGGGTGAGGCTAAAGGAGGTACATGGACATCGGCAATTCATACGCCCGGAAATTTGTAGAACATACAATTTTGGCAAGCATgtatgttgctattcttcctcattttttaattaaaatactggcagttgctatagcaatatgaataccagtcatctgtcccaaattt-cttcatgcaataaag----
||| |||||||||||| |||| ||||||||    |||  |   || |||||||| || |||||| | ||||||||||||||||||||  | |||||  ||  |   |  | ||    | |  || | | |  |   |||  || |     |   ||| |   | |  || || |  ||  || |||   |         
TTACTGGGATGATTGGCTGAGACTAAAGGAAAACCATAAAGGCCGCCAATTCATTCGACCGGAAGTCTGTAGAACATACAATTTTGGTGAACATgttagtacccgattatgctatcctatatatcatagttttacaagt--ctgtttttgt---aatgctgttaaattgacctatgttcgctgcatatgacttctgctt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78123462|gb|DV541846.1|DV541846
EST:     GGCCATTCATACGCCCGGAAATTTGTAGAACATACATTTTTGGCAAGCAT                         GGATCAAGCTTGGGACAGTTCTTCGAGCAATACTTGGAGCCCATTAAGTTA
genomic: GGCAATTCATACGCCCGGAAATTTGTAGAACATACAATTTTGGCAAGCATgtatgttgct ... ttctttgcagGGATCAAGCTTGGGACAGTTCTTCGAGCAATACTTGGAGCCCATTAAGTTA
EST: gi|71439956|gb|DR821006.1|DR821006
EST:     TTGGCAAGCAT                         GGATCAAGCTTTGCACAGTTCTTCGAGCAATACTTGGAGCCCATTAAGTTA
genomic: TTGGCAAGCATgtatgttgct ... ttctttgcagGGATCAAGCTTGGGACAGTTCTTCGAGCAATACTTGGAGCCCATTAAGTTA