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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGATAGGTTACCAGGAAGAAAATGGACAATTCGAGAGCACTGAAAGTTATCTAACATATGTCGTTGCATATGTCAAATTGTACGCGGCAATGATTCAAgtgtgtgcacttcttttcttgttccgtgcttgttttataccttctatctgaattaatgaatttttcataagacataagcctctgtccagtatactggcctattgcaattgaacagaaagttgtctctctaacttcatttacag

Basic information

species Zea mays
transcript GRMZM2G417217_T02
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G417217_T03 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os02g38250.1 (Oryza sativa), 5'ss of exon 13
ACTGATAGGTTACCAGGAAGAAAATGGACAATTCGAGAGCACTGAAAGTTATCTAACATATGTCGTTGCATATGTCAAATTGTACGCGGCAATGATTCAAgtgtgtgca-cttcttttcttgttccgtgcttgttttataccttctatctgaattaatgaatttttcataagacataagcctctgtccagtatactggcctattgcaattgaacagaaagttgtctctctaacttcatttacag
|||||| || ||||||||||||||||||||| |||||||||||||||||||| | |||||||| |  ||||| |||||  |||| || ||||||||||| ||||||    | | ||||||  |        |||  || |  |      |    | || |||| ||    ||| ||  |  |   |  | |    | |  | ||                                        
ACTGATTGGCTACCAGGAAGAAAATGGACAACTCGAGAGCACTGAAAGTTATTTGACATATGTTGCCGCATACGTCAAGCTGTATGCTGCAATGATTCAGgtgtgtatggcctgttttctaatattactagtgtggtaaaaatagctgttagggttattaattgtt----agaaatgggtatgcatttaatggttttgagtgtt----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31355428|gb|CD439785.1|CD439785
EST:     ATCTAACATATGTCGTTGCATATGTCAAATTGTACGCGGCAATGATTCAA                         ACAGAAATCAAGGGTGTACGCCATCCTCATGGCTTAGCTGAGGGATGGAAA
genomic: ATCTAACATATGTCGTTGCATATGTCAAATTGTACGCGGCAATGATTCAAgtgtgtgcac ... tcatttacagACAGAAATCAAGGGTGTACGCCATCCTCATGGCTTAGCTGAGGGATGGAAA
EST: gi|149076572|gb|EE165207.2|EE165207
EST:     CGTTGCATATGTCAAATTGTACGCGGCAATGATTCAA                         ACAGAAATCAAGGGTGTACGCCATCCTCATGGCTTAGCTGAGGGATGGAAA
genomic: CGTTGCATATGTCAAATTGTACGCGGCAATGATTCAAgtgtgtgcac ... tcatttacagACAGAAATCAAGGGTGTACGCCATCCTCATGGCTTAGCTGAGGGATGGAAA