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TGGTGTTGCTCTTCTCTATGCATCGAAGGAGCTCGATAAGTTGCAGACAGCAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggagaagaatgttggattttttcccccagattcatacttgtgtgctaagctggcgtggaatattttgtatgcag
species | Zea mays |
transcript | GRMZM2G416120_T01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TTGGTGTGCGAATCATTCAGAATGCTTTGAAG ACACCTGTACACGCCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTTEST: gi|149073907|gb|EE162235.2|EE162235
genomic: TTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggaga ... ttgtatgcagACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTT
EST: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAG ACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTTEST: gi|31349659|gb|CD434016.1|CD434016
genomic: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggaga ... ttgtatgcagACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTT
EST: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAG ACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTTEST: gi|32914117|gb|CF018929.1|CF018929
genomic: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggaga ... ttgtatgcagACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTT
EST: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAG ACACCTGTACACACCATTGCCTCCAATGGCTGGGGTGGAGGGAGCAGTAGTEST: gi|91875568|gb|EB405525.1|EB405525
genomic: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggaga ... ttgtatgcagACACCTGTACACACCATTGCCTCCAAT-GCTGGGGTGGAGGGAGCAGTAGT
EST: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAG ACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTTEST: gi|60337000|gb|DN203973.1|DN203973
genomic: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggaga ... ttgtatgcagACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTT
EST: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAG ACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTTEST: gi|60353910|gb|DN220883.1|DN220883
genomic: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggaga ... ttgtatgcagACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTT
EST: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAG ACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTTEST: gi|24764192|gb|CA399359.1|CA399359
genomic: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggaga ... ttgtatgcagACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTT
EST: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGC-TTGAAG ACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTTEST: gi|78078493|gb|DV506906.1|DV506906
genomic: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggaga ... ttgtatgcagACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTT
EST: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAG ACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTTEST: gi|87152342|gb|DY397131.1|DY397131
genomic: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggaga ... ttgtatgcagACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTT
EST: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAG ACACCTGTACACACEST: gi|67023389|gb|CO452138.1|CO452138
genomic: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggaga ... ttgtatgcagACACCTGTACACAC
EST: CGAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAG ACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTTEST: gi|60347399|gb|DN214372.1|DN214372
genomic: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggaga ... ttgtatgcagACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTT
EST: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAG ACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTTEST: gi|149077208|gb|EE165874.2|EE165874
genomic: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggaga ... ttgtatgcagACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTT
EST: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAG ACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTTEST: gi|32858330|gb|CD998011.1|CD998011
genomic: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggaga ... ttgtatgcagACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTT
EST: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAG ACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTTEST: gi|37374359|gb|CF623530.1|CF623530
genomic: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggaga ... ttgtatgcagACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTT
EST: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAG ACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTTEST: gi|4874396|gb|AI673916.1|AI673916
genomic: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggaga ... ttgtatgcagACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTT
EST: AGATTGGTGTGCAAATCATTCAGAATGCTTTGAAG ACACCTGTACACNCCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTTEST: gi|30088021|gb|CB886226.1|CB886226
genomic: AGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggaga ... ttgtatgcagACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTT
EST: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAG ACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTTEST: gi|21432198|gb|BQ547688.1|BQ547688
genomic: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggaga ... ttgtatgcagACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTT
EST: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAG ACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTTEST: gi|28982390|gb|BQ538103.2|BQ538103
genomic: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggaga ... ttgtatgcagACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTT
EST: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAG ACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTTEST: gi|32857688|gb|CD997369.1|CD997369
genomic: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggaga ... ttgtatgcagACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTT
EST: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAG ACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTANTTEST: gi|30088022|gb|CB886227.1|CB886227
genomic: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggaga ... ttgtatgcagACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTT
EST: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAG ACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTT
genomic: CAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggaga ... ttgtatgcagACACCTGTACACACCATTGCCTCCAATGCTGGGGTGGAGGGAGCAGTAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGTTGCTCTTCTCTATGCATCGAAGGAGCTCGATAAGTTGCAGACAGCAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggagaagaatgttggattttttcccccagattcatacttgtgtgctaagctggcgtggaatattttgtatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG