1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TAAGATTTCAATATTGACCACCTACAATGGTCAGAAGCTTCTTATTCGTGATGTTATCAACAAAAGATGCAAACCATGGAATATTGAGCCCCCTAACAAGgtaatttccaataagtatggtgtttgctaacagtttgctggctttatttttttgggtactgacatccatgtcatatctag
species | Zea mays |
transcript | GRMZM2G410479_T01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: ATGTTATCAACAAAAGATGCAAACCATGGAATATTGAGCCCCCTAACAAG GTTACCACTGTGGACAAGTTCCAGGGCCAGCAAAATGATTTCATTTTACTTEST: gi|6859933|gb|AW355927.1|AW355927
genomic: ATGTTATCAACAAAAGATGCAAACCATGGAATATTGAGCCCCCTAACAAGgtaatttcca ... tcatatctagGTTACCACTGTGGACAAGTTCCAGGGCCAGCAAAATGATTTCATTTTACTT
EST: ATG-TATC-ACAAAAGATGCAAA-CATGGAATATTGAGCCCCCT-ACAAG GTTACCACTGTGGACAAGTTCCAGGGCCAGCAAAATGATTTCATTTTACTTEST: gi|78179130|gb|DV549503.1|DV549503
genomic: ATGTTATCAACAAAAGATGCAAACCATGGAATATTGAGCCCCCTAACAAGgtaatttcca ... tcatatctagGTTACCACTGTGGACAAGTTCCAGGGCCAGCAAAATGATTTCATTTTACTT
EST: ATGTTATCAACAAAAGATGCAAACCATGGAATATTGAGCCCCCTAACAAG GTTACCACTGTGGACAAGTTCCAGGGCCAGCAAAATGATTTCATTTTACTTEST: gi|6952423|gb|AW424491.1|AW424491
genomic: ATGTTATCAACAAAAGATGCAAACCATGGAATATTGAGCCCCCTAACAAGgtaatttcca ... tcatatctagGTTACCACTGTGGACAAGTTCCAGGGCCAGCAAAATGATTTCATTTTACTT
EST: ATGTTATCAACAAAAGATGCAAACCATGGAATATTGAGCCCCCTAACAAG GTTACCACTGTGGACAAGTTCCAGGGCCAGCAAAATGATTTCATTTTACTT
genomic: ATGTTATCAACAAAAGATGCAAACCATGGAATATTGAGCCCCCTAACAAGgtaatttcca ... tcatatctagGTTACCACTGTGGACAAGTTCCAGGGCCAGCAAAATGATTTCATTTTACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGATTTCAATATTGACCACCTACAATGGTCAGAAGCTTCTTATTCGTGATGTTATCAACAAAAGATGCAAACCATGGAATATTGAGCCCCCTAACAAGgtaatttccaataagtatggtgtttgctaacagtttgctggctttatttttttgggtactgacatccatgtcatatctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA