Sequence
atgc intronic sequence ATGC exonic sequenceTATTTTTGGGGCTATTTTTAATTGTCTGGATCCCATATTAACCATAGTTTCTGGACTTAGTGTTAGAGATCCCTTTTTAACCCCCTTCGATAAGAAAGATgtaagtatgccttcttaatattccaatttttgtttgcctattctggcatactcaactatatatcacgcactgtgtcttgatttctattagtacctcttgc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 5'ss of exon 8
TATTTTTGGGGCTATTTTTAATTGTCTGGATCCCATATTAACCATAGTTTCTGGACTTAGTGTTAGAGATCCCTTTTTAACCCCCTTCGATAAGAAAGATgtaagta-tgccttcttaatattccaatttttgtttgcctattctggcatactcaactatatatcacgcactgtgtcttgatttctattagtac-ctcttgc
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GATTTTTGGTGCTATTTTTAATTGCCTTGATCCCATATTAACCATTGTTTCGGGACTTAGTGTGAGAGATCCATTCTTGACTCCATTTGACAAGAAGGATgtaagtaattctttcttagaactccagtttgaact-gcctcttgtaatgcattcaaa-attttttgtgttcctaatgcagtaaaatatgtatattctgttat
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA20G25800.1 (Glycine max), 5'ss of exon 17
TATTTTTGGGGCTATTTTTAATTGTCTGGATCCCATATTAACCATAGTTTCTGGACTTAGTGTTAGAGATCCCTTTTTAACCCCCTTCGATAAGAAAGATgtaagt-atgccttcttaatatt-ccaatttttgtttgcctattctggcatactcaactatatatcacgcactgtgtcttgatttctatta-gtacctcttgc
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AATATTAGGTGCTATTTTCAATTGCCTGGATCCCATATTAACTGTGGTTGCTGGGCTTAGCGTGAGAGATCCTTTTCTAACACCATTGGATAAAAGAGATgtaagttgttcctgtttcagatgattgagtaattattgaaaagctaatccctttttattataggtcactca--aaatttaattgtatattacataactataa-
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA09G18490.1 (Glycine max), 5'ss of exon 9
TATTTTTGGGGCTATTTTTAATTGTCTGGATCCCATATTAACCATAGTTTCTGGACTTAGTGTTAGAGATCCCTTTTTAACCCCCTTCGATAAGAAAGATgtaagtatgccttctt---aatattccaatttttgtttgcctattctggcatactcaactatat-atcacgcactgtgtcttgatttctattagtacctcttgc
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TATATTTGGTGTTATCTTCAATTGCCTGGATCCCATATTAACTATTGTTGCTGGCCTTAGTGTTAGAGATCCTTTTCTAACACCTTTGGATAAAAAAGATgtaagttttttctgttttaaatgactgcaatattattggaat-tgagaacagactgaacttaattgttaaaagatttgcttgagggatgaagattgcctaa---
upper sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 14
lower sequence: Vv01s0011g04360.t01 (Vitis vinifera), 5'ss of exon 14
TATTTTTGGGGCTATTTTTAATTGTCTGGATCCCATATTAACCATAGTTTCTGGACTTAGTGTTAGAGATCCCTTTTTAACCCCCTTCGATAAGAAAGATgtaagtatgccttct-taatattccaatttttgtttgcctattctggcatactcaactatatatcacgcactgtgtcttgatttctattagtacctcttgc
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TATACTGGGGGCTGTCTTCAATTGCCTAGATCCAATACTAACCATCGTTGCTGGACTTAGTGTTAGAGATCCATTCTTAACACCATTGGACAAGAAGGATgtaagtccacttcctctgttatttgattagatgaaggtaaaatgctctgt-ttcagatagatagagacaaaggtttgttctgtcattctggtgctctttatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37416592|gb|CF645948.1|CF645948EST: CTGGACTTAGTGTTAGAGATCCCTTTTTAACCCCCTTCGATAAGAAAGAT CTTGCAGAGTCAGCTAAGTTGCAGTTTTCATGCCGGGACTACAGTGATCAT
genomic: CTGGACTTAGTGTTAGAGATCCCTTTTTAACCCCCTTCGATAAGAAAGATgtaagtatgc ... gtccatgcagCTTGCAGAGTCAGCTAAGTTGCAGTTTTCATGCCGGGACTACAGTGATCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATTTTTGGGGCTATTTTTAATTGTCTGGATCCCATATTAACCATAGTTTCTGGACTTAGTGTTAGAGATCCCTTTTTAACCCCCTTCGATAAGAAAGATgtaagtatgccttcttaatattccaatttttgtttgcctattctggcatactcaactatatatcacgcactgtgtcttgatttctattagtacctcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA