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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTGAGGTTGCAAAAGCCCGTGCGAGTACAAACAAAGTTGTTTGTTGCCATTTCTCATTGGATGGGAAACTTCTTGCCACCGGAGGGCATGATAAAAAGgtgtggatgccaagatgaaacgaatttgcctttacgcgataaagaaatttcatgctacatgtttctttttcag

Basic information

species Zea mays
transcript GRMZM2G361398_T02
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G361398_T02 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os01g42270.1 (Oryza sativa), 5'ss of exon 13
TACTGAGGTTGCAAAAGCCCGTGCGAGTACAAACAAAGTTGTTTGTTGCCATTTCTCATTGGATGGGAAACTTCTTGCCACCGGAGGGCATGATAAAAAGgtgtggatgccaagatgaaacgaatttgcctttacgcgataaagaaat---ttcatgctacatgtttctttttcag
||  |||||||||||||| ||||| ||||||||||| |||| |||||| |||||||| | ||||||||||||||| ||||| ||||| ||||||||||| ||||| |    |||     | | ||||     | |   | || |  ||   || || ||  || ||| ||||||||
TATCGAGGTTGCAAAAGCTCGTGCAAGTACAAACAAGGTTGATTGTTGTCATTTCTCGTCGGATGGGAAACTTCTAGCCACGGGAGGCCATGATAAAAAAgtgtgtaa---aagcaactatggattttgtggtgc-taaaaaggctatatatttatact-tatctttttttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211173099|gb|FL062288.1|FL062288
EST:     TTGGATGGGAAACTTCTTGCCACCGGAGGGCATGATAAAAAG                         GTCGTTTTATGGTTTACAGATGTGCTAAAACGTAAATCCGCATTAGAAGAG
genomic: TTGGATGGGAAACTTCTTGCCACCGGAGGGCATGATAAAAAGgtgtggatgc ... tctttttcagGTCGTTTTATGGTTTACAGATGTGCTAAAACGTAAATCCGCATTAGAAGAG
EST: gi|21760046|gb|BQ635587.1|BQ635587
EST:     ATTTCTCATTGGATGGGAAACTTCTTGCCACCGGAGGGCATGATAAAAAG                         GTCGTTTTATGGTTTACAGATGTGCTAAAACGTAAATCCGCATTAGAAGAG
genomic: ATTTCTCATTGGATGGGAAACTTCTTGCCACCGGAGGGCATGATAAAAAGgtgtggatgc ... tctttttcagGTCGTTTTATGGTTTACAGATGTGCTAAAACGTAAATCCGCATTAGAAGAG
EST: gi|211173100|gb|FL062289.1|FL062289
EST:     TTGGATGGGAAACTTCTTGCCACCGGAGGGCATGATAAAAAG                         GTCGTTTTATGGTTTACAGATGTGTTAAAACGTAAATCCGCATTAGAAGAG
genomic: TTGGATGGGAAACTTCTTGCCACCGGAGGGCATGATAAAAAGgtgtggatgc ... tctttttcagGTCGTTTTATGGTTTACAGATGTGCTAAAACGTAAATCCGCATTAGAAGAG
EST: gi|51593024|gb|CV072170.1|CV072170
EST:     ATTTCTCATTGGATGGGAAACTTCTTGCCACCGGAGGGCATGATAAAAAG                         GTCGTTTTATGGTTTACAGATGTGCTAAAACGTAAATCCGCATTAGAAGAG
genomic: ATTTCTCATTGGATGGGAAACTTCTTGCCACCGGAGGGCATGATAAAAAGgtgtggatgc ... tctttttcagGTCGTTTTATGGTTTACAGATGTGCTAAAACGTAAATCCGCATTAGAAGAG
EST: gi|211173101|gb|FL062290.1|FL062290
EST:     TTGGATGGGAAACTTCTTGCCACCGGAGGGCATGATAAAAAG                         GTCGTTTTATGGTTTACAGATGTGCTAAAACGTAAATCCGCATTAGAAGAG
genomic: TTGGATGGGAAACTTCTTGCCACCGGAGGGCATGATAAAAAGgtgtggatgc ... tctttttcagGTCGTTTTATGGTTTACAGATGTGCTAAAACGTAAATCCGCATTAGAAGAG
EST: gi|31358706|gb|CD443063.1|CD443063
EST:     ATTTCTCATTGGATGGGAAACTTCTTGCCACCGGAGGGCATGATAAAAAG                         GTCGTTTGATGGTTTACAGATGTGCTAAAACGTAAATCCGCATTAGAAGAG
genomic: ATTTCTCATTGGATGGGAAACTTCTTGCCACCGGAGGGCATGATAAAAAGgtgtggatgc ... tctttttcagGTCGTTTTATGGTTTACAGATGTGCTAAAACGTAAATCCGCATTAGAAGAG