1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GCCCTTTATGATGCTTTGATGCGACAGGATGAGCTACTCGCGTACATTGATAGGCAGGAGCTGATCAAATTTCGTgtatgttactgttctcccacctttttccatcttttgagatataaatatgtaattacatttccacccgctcaatgtctgatcattaagtttttgagtcccatctaattgattgttgtccactatgtttgattgtttgccttgtgcag
species | Zea mays |
transcript | GRMZM2G355610_T01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: AGGATGAGCTACTCGCGTACATTGATAGGCAGGAGCTGATCAAATTTCGT AAAAAGAAGTTCTGCTTCTAAGATTTGACCGTGGAGCAGCTGTTCATGTCCEST: gi|211507033|gb|FL069755.1|FL069755
genomic: AGGATGAGCTACTCGCGTACATTGATAGGCAGGAGCTGATCAAATTTCGTgtatgttact ... ccttgtgcagAAAAAGAAGTTCTGCTTCTAAGATTTGACCGTGGAGCAGCTGTTCATGTCC
EST: AGGATGAGCTACTCGCGTACATTGATAGGCAGGAGCTGATCAAATTTCGT AAAAAGAAGTTCTGCTTCTAAGATTTGACCGTGGAGCAGCTGTTCATGTCCEST: gi|13149310|gb|BG319632.1|BG319632
genomic: AGGATGAGCTACTCGCGTACATTGATAGGCAGGAGCTGATCAAATTTCGTgtatgttact ... ccttgtgcagAAAAAGAAGTTCTGCTTCTAAGATTTGACCGTGGAGCAGCTGTTCATGTCC
EST: AGGATGAGCTACTCGCGTACATTGATAGGCAGGAGCTGATCAAATTTCGT AAAAAGAAGTTCTGCTTCTAAGATTTGACCGTGGAGCAGCTGTTCATGTCC
genomic: AGGATGAGCTACTCGCGTACATTGATAGGCAGGAGCTGATCAAATTTCGTgtatgttact ... ccttgtgcagAAAAAGAAGTTCTGCTTCTAAGATTTGACCGTGGAGCAGCTGTTCATGTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCTTTATGATGCTTTGATGCGACAGGATGAGCTACTCGCGTACATTGATAGGCAGGAGCTGATCAAATTTCGTgtatgttactgttctcccacctttttccatcttttgagatataaatatgtaattacatttccacccgctcaatgtctgatcattaagtttttgagtcccatctaattgattgttgtccactatgtttgattgtttgccttgtgcag
- - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT