Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATTACGGCTGAGGATAGAGGATCCTCCTCGGAGAAAGCACATGGTGTATCTGGGAGGTGCAGTGCTTGCTGGGATCATGAAGgtaattcttgtatatgcgaatggcatttacactgtgatggattgctagcaatatacttccccgcgtactgtttggaacgtgcag

Basic information

species Zea mays
transcript GRMZM2G342386_T01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G342386_T02 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os08g28190.1 (Oryza sativa), 5'ss of exon 14
AAATTACGGCTGAGGATAGAGGATCCTCCTCGGAGAAAGCACATGGTGTATCTGGGAGGTGCAGTGCTTGCTGGGATCATGAAGgtaattcttgtatatgcgaatggcatttacactgtgatggattgctagcaatatacttccccgc-gtactgtttggaacgtgcag-----------------------------------------------------------------------------------------------------
||||| ||  || ||||||||||||| || |||||||| |||||||| || ||||| |||||||| || ||||| ||||||||||||||     | |     |  |  || ||  || |     |||   |||||     |    |   |||  |    ||||    |                                                                                                      
AAATTGCGTTTGCGGATAGAGGATCCGCCACGGAGAAAACACATGGTTTACCTGGGTGGTGCAGTACTCGCTGGAATCATGAAGgtaatatacttttcccacagcgttatatat-ctatcggttattataagcaaagccttgggacaaagtagagaggtgaacagaaaaggagcacaaaagatgaaatcatgcattactgtgtgtgcattgtcgcatgggaatctgctcattttgctttattactttgctgacggctgttcacctagcag

upper sequence: GRMZM2G342386_T02 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA16G05780.1 (Glycine max), 5'ss of exon 14
AAATTACGGCTGAGGATAGAGGATCCTCCTCGGAGAAAGCACATGGTGTATCTGGGAGGTGCAGTGCTTGCTGGGATCATGAAGgtaattcttgtatat--gcgaatggcatttacactgtg-atggattg--ctagcaatatacttcc-----ccgcgtactgtttggaacgtgcag
|||||||| || || || |||||||| || || || |||||||||||||| || |||||||| || ||||| || || |||||||||    ||   | |    |  | |  ||| | ||  | || |  |   ||  |||| ||  |       |     ||   ||  ||    |||
AAATTACGACTAAGAATTGAGGATCCACCACGTAGGAAGCACATGGTGTACCTTGGAGGTGCTGTCCTTGCAGGAATAATGAAGgtatgagttagttgttaatgttttggtttttctctaggcataggcttatctgtcaatgtagatgtgaaagctattgacatattttaaaactcag

upper sequence: GRMZM2G342386_T02 (Zea mays), 5'ss of exon 14
lower sequence: Vv14s0068g01630.t01 (Vitis vinifera), 5'ss of exon 14
AAATTACGGCTGAGGATAGAGGATCCTCCTCGGAGAAAGCACATGGTGTATCTGGGAGGTGCAGTGCTTGCTGGGATCATGAAGgtaattcttgtata------tgcgaatggcatttacactgtg------------atggatt---gcta-gcaatatacttccccgcgtactgtttggaacgtgcag---------------------------------------------------------------------
||| | ||  || ||||||||||||| || || |||||||| |||||||| || ||||||||||| ||||| || || ||||||||   | |||   |      | |   | | ||||   ||               |||| ||   |||   | | ||  |  |   | | || |   |   |  |||                                                                     
AAACTGCGATTGCGGATAGAGGATCCACCACGAAGAAAGCATATGGTGTACCTTGGAGGTGCAGTCCTTGCAGGAATTATGAAGgtgccttttgctcaaacctttactgcttgtatttctgctccataatttaactgaatgggtttatgctgtactaaatcttctcttccctgctttcaagtctggccagcagaaaaccgaccttttgatgttttaattgcttgatcatttatttgattttgctggtgaaccaatgtag