1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TGGGCATTTGGACTCCTACTCTGAAAAACCAGATAATATATGATGATGGTTCTGTCCAAAAGATAGCAGAAATCCCAGATGATCTGAAAGCAATCTACAAgtatgtatttcaaccagatgccattatttcctataaaattcgattactaatttactgtttgagcttctaaagtttatatacaattattgcaccag
species | Zea mays |
transcript | GRMZM2G340527_T01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TCTGTCCAAAAGATAGCAGAAATCCCAGATGATCTGAAAGCAATCTACAA GACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGATATGGCGGTTGACCGEST: gi|21389965|gb|BQ528014.1|BQ528014
genomic: TCTGTCCAAAAGATAGCAGAAATCCCAGATGATCTGAAAGCAATCTACAAgtatgtattt ... attgcaccagGACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGATATGGCGGTTGACCG
EST: TCTGTCCAAAAGATAGCAGAAATCCCAGATGATCTGAAAGCAATCTACAA GACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGATATGGCGGTTGACCGEST: gi|76015090|gb|DT942260.1|DT942260
genomic: TCTGTCCAAAAGATAGCAGAAATCCCAGATGATCTGAAAGCAATCTACAAgtatgtattt ... attgcaccagGACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGATATGGCGGTTGACCG
EST: TCTGTCCAAAAGATAGCAGAAATCCCAGATGATCTGAAAGCAATCTACAA GACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGATATGGCGGTTGACCGEST: gi|211165337|gb|FL103225.1|FL103225
genomic: TCTGTCCAAAAGATAGCAGAAATCCCAGATGATCTGAAAGCAATCTACAAgtatgtattt ... attgcaccagGACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGATATGGCGGTTGACCG
EST: TCTGTCCAAAAGATAGCAGAAATCCCAGATGATCTGAAAGCAATCTACAA GACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGATATGGCGGTTGACCGEST: gi|76018236|gb|DT945406.1|DT945406
genomic: TCTGTCCAAAAGATAGCAGAAATCCCAGATGATCTGAAAGCAATCTACAAgtatgtattt ... attgcaccagGACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGATATGGCGGTTGACCG
EST: TCTGTCCAAAAGATAGCAGAAATCCCAGATGATCTGAAAGCAATCTACAA GACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGATATGGCGGTTGACCGEST: gi|32930349|gb|CF035161.1|CF035161
genomic: TCTGTCCAAAAGATAGCAGAAATCCCAGATGATCTGAAAGCAATCTACAAgtatgtattt ... attgcaccagGACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGATATGGCGGTTGACCG
EST: TCTGTCCAAAAGATAGCAGAAATCCCAGATGATCTGAAAGCAATCTACAA GACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGATATGGCGGTTGACCGEST: gi|32932558|gb|CF037370.1|CF037370
genomic: TCTGTCCAAAAGATAGCAGAAATCCCAGATGATCTGAAAGCAATCTACAAgtatgtattt ... attgcaccagGACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGATATGGCGGTTGACCG
EST: TCTGTCCAAAAGATAGCAGAAATCCCAGATGATCTGAAAGCAATCTACAA GACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGATATGGCGGTTGACCGEST: gi|211165340|gb|FL103228.1|FL103228
genomic: TCTGTCCAAAAGATAGCAGAAATCCCAGATGATCTGAAAGCAATCTACAAgtatgtattt ... attgcaccagGACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGATATGGCGGTTGACCG
EST: TCTGTCCAAAAGATAGCAGAAATCCCAGATGATCTGAAAGCAATCTACAA GACTGTTTGGGAGATCAAGCAGAANACTTTAGTTGATATGGCGGTTGACCGEST: gi|32919054|gb|CF023866.1|CF023866
genomic: TCTGTCCAAAAGATAGCAGAAATCCCAGATGATCTGAAAGCAATCTACAAgtatgtattt ... attgcaccagGACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGATATGGCGGTTGACCG
EST: TCTGTCCAAAAGATAGCAGAAATCCCAGATGATCTGAAAGCAATCTACAA GACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGATATGGCGGTTGACCG
genomic: TCTGTCCAAAAGATAGCAGAAATCCCAGATGATCTGAAAGCAATCTACAAgtatgtattt ... attgcaccagGACTGTTTGGGAGATCAAGCAGAAAACTTTAGTTGATATGGCGGTTGACCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGCATTTGGACTCCTACTCTGAAAAACCAGATAATATATGATGATGGTTCTGTCCAAAAGATAGCAGAAATCCCAGATGATCTGAAAGCAATCTACAAgtatgtatttcaaccagatgccattatttcctataaaattcgattactaatttactgtttgagcttctaaagtttatatacaattattgcaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA