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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAATGTCGCAAAGTTTGAGGGTCATGTCGGACCAGTCACTGCTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCGgtacgtaatttagataaaagctacgtgcacaatgacaaatttatttagtttctaatatttccatcactttacag

Basic information

species Zea mays
transcript GRMZM2G324540_T01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G324540_T01 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os10g32880.1 (Oryza sativa), 5'ss of exon 12
TCAAATGTCGCAAAGTTTGAGGGTCATGTCGGACCAGTCACTGCTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCGgtacgtaatttagataaaagctacgtgcacaatgacaaatttatttagt-ttctaatat---ttccatcactttacag
|||||||| |||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||| | |  |      |  || |  |||| ||||   ||||| |||  | |||| ||||   |  ||||||| |||||
TCAAATGTTGCAAAGTTTGAGGGGCATGTTGGACCAGTGACTGCTATGTCCTTCTCTGAAAATGGTTACTTCCTTGCGgtatgaatctctccatagtgcaatctgcaaaatgttgaatttcttttttattctgatatatgtatcatcactgtacag

upper sequence: GRMZM2G324540_T01 (Zea mays), 5'ss of exon 14
lower sequence: AT2G33340.1 (Arabidopsis thaliana), 5'ss of exon 14
TCAAATGTCGCAAAGTTTGAGGGTCATGTCGGACCAGTCACTGCTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCGgtacgtaatttagataaaa-gctacgtgcacaatgacaaatttatttagtttctaatatttccatcactttacag--------------
 ||||||| || |||||||| || ||    ||   ||| || ||||| |||||||||||||||||||||||||| |||||  ||| |||  | ||||  | |   |    |  |||  || | |||   |   ||   |   |  ||||                  
GCAAATGTGGCTAAGTTTGATGGACACACTGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGgtgagtactttgaacaaaatacgagaagagagaatacagcttaagttatgcttacatgaatgattttctttttgtcctggaattgacag

upper sequence: GRMZM2G324540_T01 (Zea mays), 5'ss of exon 14
lower sequence: Vv05s0049g01840.t01 (Vitis vinifera), 5'ss of exon 14
TCAAATGTCGCAAAGTTTGAGGGTCATGTCGGACCAGTCACTGCTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCGgtacgtaattt---agataaaagc---tacgtgcacaa-tgacaaatttatttagtttctaatatttccatcactttacag
 ||||||| ||||  ||||| || || || ||  | || |||||||| |||||||| ||||||||||||||||| |||||| ||  |||   |  || |||    || |||   || ||||| |  | | |  ||| | ||  ||  ||   ||||   
GCAAATGTGGCAAGATTTGACGGGCACGTTGGGGCTGTAACTGCTATATCTTTCTCAGAAAATGGTTACTTCCTTGCGgtatgtgttttcctaattagaagtgtatatgtgaggaagtgacatacatttctgattttttatgcttg-atgtttttag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33096397|gb|CF056391.1|CF056391
EST:     TCGGACCAGTCACTGCTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCG                         ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAAT
genomic: TCGGACCAGTCACTGCTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCGgtacgtaatt ... cactttacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAAT
EST: gi|211125230|gb|FL005603.1|FL005603
EST:     TCGGACCAGTCACTGCTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCG                         ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAAT
genomic: TCGGACCAGTCACTGCTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCGgtacgtaatt ... cactttacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAAT
EST: gi|37394216|gb|CF634379.1|CF634379
EST:     TGAAAATGGTTACTTCCTAGCG                         ACTGCTGCTCATGATGGTGTTAAACTTTGGGATCTTCGTAATTTAAGAAAT
genomic: TGAAAATGGTTACTTCCTAGCGgtacgtaatt ... cactttacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAAT
EST: gi|32932206|gb|CF037018.1|CF037018
EST:     TCTGAAAATGGTTACTTCCTAGCG                         ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAAT
genomic: TCTGAAAATGGTTACTTCCTAGCGgtacgtaatt ... cactttacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAAT
EST: gi|32834072|gb|CD973750.1|CD973750
EST:     TCGGACCAGTCACTGCTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCG                         ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAAT
genomic: TCGGACCAGTCACTGCTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCGgtacgtaatt ... cactttacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAAT
EST: gi|60337485|gb|DN204458.1|DN204458
EST:     TCGGACCAGTCACTGCTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCG                         ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTT
genomic: TCGGACCAGTCACTGCTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCGgtacgtaatt ... cactttacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTT
EST: gi|32931746|gb|CF036558.1|CF036558
EST:     TCGGACCAGTCACTGCTATGTCCTTCTCTGAAAATGGTTACTTCCTAGCG                         ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAAT
genomic: TCGGACCAGTCACTGCTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCGgtacgtaatt ... cactttacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAAT
EST: gi|13490541|gb|BG517305.1|BG517305
EST:     TCGGACCAGTCACTGCTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCG                         ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAAT
genomic: TCGGACCAGTCACTGCTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCGgtacgtaatt ... cactttacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAAT
EST: gi|116828456|gb|EC857640.1|EC857640
EST:     TCGGACCAGTCACTGCTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCG                         ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAAT
genomic: TCGGACCAGTCACTGCTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCGgtacgtaatt ... cactttacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAAT
EST: gi|32835644|gb|CD975322.1|CD975322
EST:     CGGACCAGTCACTGGCTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCG                         ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAAT
genomic: CGGACCAGTCACT-GCTATGTCTTTCTCTGAAAATGGTTACTTCCTAGCGgtacgtaatt ... cactttacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAAT