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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATACATTCTTTGCTGTTGGATCTCCCTTGGGTGTCTTCCTTTCCCTGCGTAATGTCCGTATTGGTATTGgtatgtgaccttcgactgataataattaagattatttacccttcgttgcatggtagcctgaacaaagacctatgtatcatcaagggtgatgttgatagtg...

Basic information

species Zea mays
transcript GRMZM2G318860_T01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G318860_T02 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os08g01920.1 (Oryza sativa), 5'ss of exon 14
GTTGATACATTCTTTGCTGTTGGATCTCCCTTGGGTGTCTTCCTTTCCCTGCGTAATGTCCGTATTGGTATTGgtatgtgaccttcgactgataataattaagattatttacccttcgttgcatggtagcctgaacaaagacctatg-tatc-atcaagggtgatgttgatagtg----
||||| ||||||| |||||||||||| ||||| || || ||| | |||||||| ||||| || |||||||||||||||| | ||| |||    |||| ||  | |||| | |  ||  ||      ||||   | |||     | || | ||      || | |  || | |       
GTTGACACATTCTATGCTGTTGGATCCCCCTTAGGAGTTTTCTTGTCCCTGCGGAATGTTCGCATTGGTATTGgtatgttaactttgac----aatagttctgcttatatgcagttttttctggactagc--aaccaaccttttgtgatgtctgctttggtttacatttacacaaactc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31354196|gb|CD438553.1|CD438553
EST:     ATCTCCCTTGGGTGTCTTCCTTTCCCTGCGTAATGTCCGTATTGGTATTG                         GCAAAGGACAAGACTATTGGCAAGATAAGAACGTAATTGAAGAGATGCCAT
genomic: ATCTCCCTTGGGTGTCTTCCTTTCCCTGCGTAATGTCCGTATTGGTATTGgtatgtgacc ... tgttgtacagGCAAAGGACAAGACTATTGGCAAGATAAGAACGTAATTGAAGAGATGCCAT