Sequence
atgc intronic sequence ATGC exonic sequenceAATGGCAAAATTCAATGCAGGCTTTACTCACTGCAACCAAAGTTTCGTAAAGGACTGCGTGGGACCTGCAAAAGAAAGCTACGAACGTAGAATGTCAAAGgtttgcctgttaattctgaatatagttttcatgtcagtcatcaaggagtgtaagggtgaaatcatgattttttagtgtagtatttgtatgtttgggtgtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G305254_T04 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 5'ss of exon 15
AATGGCAAAATTCAATGCAGGCTTTACTCACTGCAACCAAAGTTTCGTAAAGGACTGCGTGGGACCTGCAAAAGAAAGCTACGAACGTAGAATGTCAAAGgt---ttgcctgtta----------attctgaatatagttttcatgtcagtcatcaaggagtgtaagggtgaaatcatgattttttagtgtagtatttgtatgtttgggtgtt
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CATGGCAAAGTTCAATGCAGGGTTTTTTCACTGCAATCGAAGTTTTGTAAGGGAATGTGTGGGCCCTGCAAAGGAAAGCTACGAGCGCAGAATGTCAAAGgtatataacatgtttcctttactgcagtcccaagatagtttgcatgacatctatggaataacccaaggatgaaat-gtgaaattccatttgcat-cctgtac-----------
upper sequence: GRMZM2G305254_T04 (Zea mays), 5'ss of exon 14
lower sequence: Vv07s0141g00110.t01 (Vitis vinifera), 5'ss of exon 14
AATGGCAAAATTCAATGCAGGCTTTACTCACTGCAACCAAAGTTTCGTAAAGGACTGCGTGGGACCTGCAAAAGAAAGCTACGAACGTAGAATGTCAAAGgtttgcctg--ttaattctgaatatagttttcatgtcagtcatcaaggagtgtaagggtgaaatcatgattttttagtgtagtatttgtatgtttgggtgtt
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CATGGCAAAATTTAATGCTGGGTTCCTTCACTGCAACCAAAGTTTCGGAAAGGAGTGTGTTGGACCTTCAAAGACCAACTATGAGCAGCGAATGACAAAGgtttggccaaatttctcttttctataggcgattttacttttattttcttat-tctggttgatggttgggaattgtagtttgattcaagtttcttgaattgt-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|20802594|gb|BQ293644.1|BQ293644EST: AGGACTGCGTGGGACCTGCAAAAGAAAGCTACGAACGTAGAATGTCAAAG ATGCTTGCCAAGTCTCGTGCTCTTTTCATCAAGGAGTACAATAACAAGCTT
genomic: AGGACTGCGTGGGACCTGCAAAAGAAAGCTACGAACGTAGAATGTCAAAGgtttgcctgt ... ttgtgttcagATGCTTGCCAAGTCTCGTGCTCTTTTCATCAAGGAGTACAATAACAAGCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATGGCAAAATTCAATGCAGGCTTTACTCACTGCAACCAAAGTTTCGTAAAGGACTGCGTGGGACCTGCAAAAGAAAGCTACGAACGTAGAATGTCAAAGgtttgcctgttaattctgaatatagttttcatgtcagtcatcaaggagtgtaagggtgaaatcatgattttttagtgtagtatttgtatgtttgggtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA