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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATAAAGTTCTGGGGAGTTCATATCCATGGATTGCAAGAAAAGTTCTCACTGACAGTTCACCAAAGCTTCGATCAACTTTGCAGACTCTTCTTTATAAGgttgatatatttcagtatttgtattctttgacgattttaaatcatactaactgctaaggtgtcaatcacgctaagtttacatgatcaataatcataacta...

Basic information

species Zea mays
transcript GRMZM2G305007_T02
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G305007_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os04g54790.1 (Oryza sativa), 5'ss of exon 15
GTATAAAGTTCTGGGGAGTTCATATCCATGGATTGCAAGAAAAGTTCTCACTGACAGTTCACCAAAGCTTCGATCAACTTTGCAGACTCTTCTTTATAAGgttgatatatttcagtatttgtattctttgacgattttaaatcatactaactgctaaggtgtcaatcacgctaagtttacatgatcaataatcataacta---------
 || |||||  |||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||  ||       |   |||  ||| |  | | ||| ||||| ||  | |      | ||| | ||      |||||| ||  | |||  |  ||||            
CTACAAAGTCTTGGGCAGTTCATACCCATGGATTGCAAGAAAAGTTCTCACAGACAGCTCACCAAAGCTCCGATCAACTTTGCAGACGCTTCTTTATAAGgtcaat------taaccttttaattttcaggcaattataaattatgatgaaac---aagtgaccatgctagcaagtttgcaaaaccaaagaagataataggaatacagg

upper sequence: GRMZM2G305007_T03 (Zea mays), 5'ss of exon 9
lower sequence: Vv18s0001g01620.t01 (Vitis vinifera), 5'ss of exon 15
GTATAAAGTTCTGGGGAGTTCATATCCATGGATTGCAAGAAAAGTTCTCACTGACAGTTCACCAAAGCTTCGATCAACTTTGCAGACTCTTCTTTATAAGgttgatatatttcagtatttgtattctttgacgattttaaatcatactaactgctaaggtgtcaatca---cgctaagtttacatgatcaataatcataacta-----------------------------------
 || |||||| | || ||| |||| ||||||||||| ||||||||||| |||||||| ||||| || ||    ||  |||||||| ||||||||||||||||  || |||   |   ||| | ||| || | |  | | | |  | |   |||   | || | || |     | |   | ||||  | ||||  | |||   |                                   
TTACAAAGTTTTAGGTAGTACATACCCATGGATTGCTAGAAAAGTTCTAACTGACAGCTCACCCAAACTGAAGTCTTCTTTGCAGGCTCTTCTTTATAAGgtaaatctatgaaaac-tttcttttccttcaagtatgtcagttttgcc--ctgtacatgtattaacctgattgttctctctacacaaacaatgtttatatagaaccactatccctgattctagaatgtgtcttgttag

upper sequence: GRMZM2G305007_T03 (Zea mays), 5'ss of exon 9
lower sequence: PP1S199_8V6.1 (Physcomitrella patens), 5'ss of exon 15
GTATAAAGTTCTGGGGAGTTCATATCCATGGATTGCAAGAAAAGTTCTCACTGACAGTTCACCAAAGCTTCGATCAACTTTGCAGACTCTTCTTTATAAGgttgatatatttcagtatttgtattctttgacgattttaaatcat---actaactgctaaggtgtcaatcacgctaagtttacatgatcaata-atcataacta
 |||||||| ||| | ||||||||||||||||| ||  | || || ||||||||||  |||||||||||||| || ||| | |||    |  | || || ||  |  |  | ||       |  |||      |||||||            | |    ||   |   |     |  || ||  |  |   |  || ||| |  
CTATAAAGTACTGAGTAGTTCATATCCATGGATAGCGCGGAAGGTCCTCACTGACAAATCACCAAAGCTTCGGTCCACTCTTCAGGAAATAGTATACAAAgt--acttgctacatatcccttcctctcgtgtaattttaagctgatgggtcgattctcgagtctttttttgttttttgtataagttttgcttgtattatacc--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6020457|gb|AW065385.1|AW065385
EST:     CTGACAGTTCGCCAAAGCTTCGATCAACTTTGCAGACTCTTCTTTATAAG                         GATGGCACTTTCCAAATTGATCGCCTGGAATCTTTGTTAACTGAG
genomic: CTGACAGTTCACCAAAGCTTCGATCAACTTTGCAGACTCTTCTTTATAAGgttgatatat ... tatgttacagGATGGCACTTTCCAAATTGATCGCCTGGAATCTTTGTTAACTGAG
EST: gi|6194572|gb|AW146676.1|AW146676
EST:     CTGACAGTTCGCCAAAGCTTCGATCAACTTTGCAGACTCTTCTTTATAAG                         GATGGCACTTTCCAAATTGATCGCCTGGAATCTTTGTTAACTGAG
genomic: CTGACAGTTCACCAAAGCTTCGATCAACTTTGCAGACTCTTCTTTATAAGgttgatatat ... tatgttacagGATGGCACTTTCCAAATTGATCGCCTGGAATCTTTGTTAACTGAG
EST: gi|71768064|gb|DR966001.1|DR966001
EST:     GATCAACTTTGCAGACTCTTCTTTATAAG                         GATGGCACTTTCCAAATTGATCGCCTGGAATCTTTGTTAACTGAG
genomic: GATCAACTTTGCAGACTCTTCTTTATAAGgttgatatat ... tatgttacagGATGGCACTTTCCAAATTGATCGCCTGGAATCTTTGTTAACTGAG