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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACGCAGAAGAGTGCAGCCTAGGTCAGAAACTGCAGAAACCAATCGATGATGACAGATATGATGACGTAGATGACTCTTCTTCATGCCAAGATAGCACTgtgagtattgcacctacaattcttgttcttcatttagggaacagctatgagcaaatggacatgttatttgtttctctacataacagattgtttcttacag

Basic information

species Zea mays
transcript GRMZM2G174830_T03
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174830_T02 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os12g35350.1 (Oryza sativa), 5'ss of exon 14
TCACGCAGAAGAGTGCAGCCTAGGTCAGAAACTGCAGAAACCAATCGATGATGACAGATATGATGACGTAGATGACTCTTCTTCATGCCAAGATAGCACTgtgagtattgcacctacaattcttgttcttcatttagggaacagctatgagcaaatggacatgttatttgtttctctacataacagat--tgtttcttacag
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TCAATCAGAAGCGTGCAGTTTAGCCCAAAAACTGCAGAAACCGATCGACGATGACAAGTACGATGACACTGATGATTGTTCTTCATGTCAAGCAAGCACTgtaagtgctgcaccttcaattca-gttc---------------------aatagaaaagtatattatctcttcccctgcataacagattttgtaacttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481594|gb|EY254426.1|EY254426
EST:     ATGACAGATATGATGACGTAGATGACTCTTCTTCATGCCAAGATAGCACT                         CCAAAAGGGCC
genomic: ATGACAGATATGATGACGTAGATGACTCTTCTTCATGCCAAGATAGCACTgtgagtattg ... tttcttacagCCAAAAGGGCC