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TGATGAATTTGAGGACATGCTGCGAGCTTTGACATTAGAGAGGAGCCAAATAAAAGACGCCATGGGATTTGCCTTGGATAATGCTGATGCAGCTGGCGAGgtaatgtgtaccttctaatattatgtaattagttctattttcttttattttctttattacttttttgcattgcttaatggtactgtgacttaattaggta...
species | Zea mays |
transcript | GRMZM2G174785_T01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TAAAAGACGCCATGGGATTTGCCTTGGATAATGCTGATGCAGCTGGCGAG ATTGTTGAGGTTCTTACAGAATCCTTGACACTCAAGGAGACGTCTATTCCAEST: gi|22489341|gb|BU049264.1|BU049264
genomic: TAAAAGACGCCATGGGATTTGCCTTGGATAATGCTGATGCAGCTGGCGAGgtaatgtgta ... tgcatttcagATTGTTGAGGTTCTTACAGAATCCTTGACACTCAAGGAGACGTCTATTCCA
EST: TAAAAGACGCCATGGGATTTGCCTTGGATAATGCTGATGCAGCTGGCGAG A-TGTTTGAGGTTCTTACAGAATCCTTGACACTCAAGGAGACGTCTATTCCEST: gi|87298721|gb|DY470724.1|DY470724
genomic: TAAAAGACGCCATGGGATTTGCCTTGGATAATGCTGATGCAGCTGGCGAGgtaatgtgta ... tgcatttcagATTG-TTGAGGTTCTTACAGAATCCTTGACACTCAAGGAGACGTCTATTCC
EST: TAAAAGACGCCATGGGATTTGCCTTGGATAATGCTGATGCAGCTGGCGAG ATTGTTGAGGTTCTTACAGAATCCTTGACACTCAAGGAGACGTCTATTCCAEST: gi|18383988|gb|BM417188.1|BM417188
genomic: TAAAAGACGCCATGGGATTTGCCTTGGATAATGCTGATGCAGCTGGCGAGgtaatgtgta ... tgcatttcagATTGTTGAGGTTCTTACAGAATCCTTGACACTCAAGGAGACGTCTATTCCA
EST: TGCCTTGGATAATGCTGATGCAGCTGGCGAG ATTGTTGAGGTTCTTACAGAATCCTTGACACTCAAGGAGACGTCTATTCCA
genomic: TGCCTTGGATAATGCTGATGCAGCTGGCGAGgtaatgtgta ... tgcatttcagATTGTTGAGGTTCTTACAGAATCCTTGACACTCAAGGAGACGTCTATTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGAATTTGAGGACATGCTGCGAGCTTTGACATTAGAGAGGAGCCAAATAAAAGACGCCATGGGATTTGCCTTGGATAATGCTGATGCAGCTGGCGAGgtaatgtgtaccttctaatattatgtaattagttctattttcttttattttctttattacttttttgcattgcttaatggtactgtgacttaattaggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG