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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAGTCTTCTACCTCCAACCTGAAGATTGAAGCCCTTGTATTAACAAGGCTTGTTATGGCTTCACATTCACCATCTGTGTTTCATCCATACATCAAGgtattgtagtctatcaatgttgagtagaatttggagactatcggagtggctactgattgtaaatcaaatttccag

Basic information

species Zea mays
transcript GRMZM2G168629_T05
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168629_T04 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os02g07120.1 (Oryza sativa), 5'ss of exon 14
GACAAGTCTTCTACCTCCAACCTGAAGATTGAAGCCCTTGTATTAACAAGGCTTGTTATGGCTTCACATTCACCATCTGTGTTTCATCCATACATCAAGgta-ttgtagtctatcaatgttgagtagaattt------ggagactatcggagtggctactgattgtaaatcaaatttccag
|| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||  |||||  |||||  |||  || || |||| ||| |      ||    | ||    | | || |||| |||     || ||||||
GATAAGTCATCTACCTCCAACCTGAAGATTGAAGCCCTTGTATTTACAAGACTTGTTATGGCTTCACATTCCCCAGCTGTGTTTCATCCATACATACAGgtaactgtagcgtat--atcttcagtaaaatatacttatggcatttgtcatcattg-tattgatcgtag--tgaaattccag

upper sequence: GRMZM2G168629_T04 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os02g07340.1 (Oryza sativa), 5'ss of exon 10
GACAAGTCTTCTACCTCCAACCTGAAGATTGAAGCCCTTGTATTAACAAGGCTTGTTATGGCTTCACATTCACCATCTGTGTTTCATCCATACATCAAGgta-ttgtagtctatcaatgttgagtagaattt------ggagactatcggagtggctactgattgtaaatcaaatttccag
|| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||  |||||  ||||   |||  || || |||| ||| |      ||    | ||    | | || |||| |||     || ||||||
GATAAGTCATCTACCTCCAACCTGAAGATTGAAGCCCTTGTATTTACAAGACTTGTTATGGCTTCACATTCCCCAGCTGTGTTTCATCCATACATACAGgtaactgtaacatat--atcttcagtaaaatatacttatggcatttgtcatcattg-tattgatcgtag--tgaaattccag

upper sequence: GRMZM2G168629_T04 (Zea mays), 5'ss of exon 14
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 5'ss of exon 15
GACAAGTCTTCTACCTCCAACCTGAAGATTGAAGCCCTTGTATTAACAAGGCTTGTTATGGCTTCACATTCACCATCTGTGTTTCATCCATACATCAAGgtattgtagtctatcaatgttgagtagaatttggagactatcggagtggctactgattgtaa--atcaaatttccag------------------------
|| || || ||||| |||||| |||||||||| || ||| |||| |||||  | ||  ||||||| |||||||| ||||| || ||||| |||||||||||||     |  || |||      |   |||  |  |  |||  |   |  | |  |  |||  ||    | |   |                        
GATAAATCCTCTACATCCAACTTGAAGATTGAGGCTCTTATATTCACAAGATTAGTGTTGGCTTCTCATTCACCTTCTGTTTTCCATCCTTACATCAAGgtatcacc-ttcattaattcacccttacattgaggtagcatcttaaaagtaattactcttaaggatgttgtcttttgtttgtttcttttaaagttgtctat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32859371|gb|CD999052.1|CD999052
EST:     GGCTTGTTATGGCTTCACATTCACCATCTGTGTTTCATCCATACATCAAG                         GCTCTTTCTGCACCTATACTGTCTGCTATCAGAGATAGATATTATAAAGTC
genomic: GGCTTGTTATGGCTTCACATTCACCATCTGTGTTTCATCCATACATCAAGgtattgtagt ... aaatttccagGCTCTTTCTGCACCTATACTGTCTGCTATCAGAGATAGATATTATAAAGTC