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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTTTACTCTGTCGACAGCCATGATTATTTTCTCGTCAAGAGCTTACAATGTGTTGCCACTCATTCCAATCTGTAAACAAATGATCAATGATCGCGCGgtatgtaagatcaaaatttgaagcctcattttatttatctgcatttcttttgattatggtagaaggataggcacggtgcagtggtgagagttgtctcact...

Basic information

species Zea mays
transcript GRMZM2G168449_T01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168449_T02 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os07g10550.1 (Oryza sativa), 5'ss of exon 15
ATTGTTTACTCTGTCGACAGCCATGATTATTTTCTCGTCAAGAGCTTACAATGTGTTGCCACTCATTCCAATCTGTAAACAAATGATCAATGATCGCGCGgtatgtaagatcaaaatttgaagcctcattttatttatctgcatttcttttgattatggtagaaggataggcacggtgcagtggtgaga-gttgtctcact--
 |||||||||||  | ||||| ||||| |||||||| |||||| ||| ||| ||||| || || |||||||| |||||||||||| | |||||  |  | |||||||   ||||||| |       || |  |||| | | | ||   |    | |      ||  | || ||   |       ||||| |||  |  | |  
CTTGTTTACTCTTGCTACAGCTATGATCATTTTCTCTTCAAGAACTTTCAACGTGTTACCTCTTATTCCAATATGTAAACAAATGCTGAATGAGAGAACAgtatgtatattcaaaatattg---tccagtgcattttttttccttctatagtgtaacctcctaaacaaagacaattttgcaaactgagatgtttacctatttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87154189|gb|DY398978.1|DY398978
EST:     ATGTGTTGCCACTCATTCCAATCTGTAAACAAATGATCAATGATCGCGCG                         GCCGATCCATTCCTTCGTTTGGTGGATGAGAGCAAACTTACAGCTGTCAAG
genomic: ATGTGTTGCCACTCATTCCAATCTGTAAACAAATGATCAATGATCGCGCGgtatgtaaga ... ttttgcttagGCCGATCCATTCCTTCGTTTGGTGGATGAGAGCAAACTTACAGCTGTCAAG
EST: gi|22545084|gb|BU097443.1|BU097443
EST:     ATGTGTTGCCACTCATTCCAATCTGTAAACAAATGATCAATGATCGCGCG                         GCCGATCCATTCCTTCGTTTGGTGGATGAGAGCAAACTTACAGCTGTCAAG
genomic: ATGTGTTGCCACTCATTCCAATCTGTAAACAAATGATCAATGATCGCGCGgtatgtaaga ... ttttgcttagGCCGATCCATTCCTTCGTTTGGTGGATGAGAGCAAACTTACAGCTGTCAAG
EST: gi|26455539|gb|CA827122.1|CA827122
EST:     ATGTGTTGCCACTCATTCCAATCTGTAAACAAATGATCAATGATCGCGCG                         GCCGATCCATTCCTTCGTTTGGTGGATGAGAGCAAACTTACAGCTGTCAAG
genomic: ATGTGTTGCCACTCATTCCAATCTGTAAACAAATGATCAATGATCGCGCGgtatgtaaga ... ttttgcttagGCCGATCCATTCCTTCGTTTGGTGGATGAGAGCAAACTTACAGCTGTCAAG
EST: gi|78085280|gb|DV513673.1|DV513673
EST:     ATGTGTTGCCACTCATTCCAATCTGTAAACAAATGATCAATGATCGCGCG                         GCCGATCCATTCCTTCGTTTGGTGGATGAGAGCAAACTTACAGCTGTCAAG
genomic: ATGTGTTGCCACTCATTCCAATCTGTAAACAAATGATCAATGATCGCGCGgtatgtaaga ... ttttgcttagGCCGATCCATTCCTTCGTTTGGTGGATGAGAGCAAACTTACAGCTGTCAAG