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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGCAACAACAGTTTTCTCCTGGTGCCATGCCAACAGAGAACTATTGCCTGGATACGACACTCTCTTGAAAATTTGgtatgctaattcaatatgtgttgcttgcaatagatgaaactgtgctgaagatcctcatatacagtaatacagtagactccttgagttcatgtacacatac...

Basic information

species Zea mays
transcript GRMZM2G168249_T01
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6681782|gb|AW287769.1|AW287769
EST:     TTGCCTGGATACG-CACTCTCTTGAAAATTTG                         TTGCAAGCTTGGTGAAAGCAAGATCATCCTCTGTGAAGAGGGTAGTAAGCA
genomic: TTGCCTGGATACGACACTCTCTTGAAAATTTGgtatgctaat ... ccattcgcagTTGCAAGCTTGGTGAAAGCAAGATCATCCTCTGTGAAGAGGGTAGTAAGCA
EST: gi|78543956|gb|DV621454.1|DV621454
EST:     CATGCCAACAGAGAACTATTGCCTGGATACGACACTCTCTTGAAAATTTG                         TTGCAAGCTTGGTGAAAGCAAGATCATCCTCTGTGAAGAGGGTAGTAAGCA
genomic: CATGCCAACAGAGAACTATTGCCTGGATACGACACTCTCTTGAAAATTTGgtatgctaat ... ccattcgcagTTGCAAGCTTGGTGAAAGCAAGATCATCCTCTGTGAAGAGGGTAGTAAGCA
EST: gi|5608069|gb|AI901736.1|AI901736
EST:     TTGAAAATTTG                         TTGCAAGCTTGGTGAAAGCAAGATCATCCTCTGTGAAAAGGGTAGTAAGCC
genomic: TTGAAAATTTGgtatgctaat ... ccattcgcagTTGCAAGCTTGGTGAAAGCAAGATCATCCTCTGTGAAGAGGGTAGTAAGCA
EST: gi|32907039|gb|CF011852.1|CF011852
EST:     CATGCCAACAGAGAACTATTGCCTGGATACGACACTCTCTTGAAAATTTG                         TTGCAAGCTTGGTGAAAGCAAGATCATCCTCTGTGAAGAGGGTAGTAAGCA
genomic: CATGCCAACAGAGAACTATTGCCTGGATACGACACTCTCTTGAAAATTTGgtatgctaat ... ccattcgcagTTGCAAGCTTGGTGAAAGCAAGATCATCCTCTGTGAAGAGGGTAGTAAGCA
EST: gi|5901140|gb|AW042240.1|AW042240
EST:     CATGCCAACAGAGAACTATTGCCTGGATACGACACTCTCTTGAAAATTTG                         CTGCAAGCTTGGTGAAAGCAAGATCATCCTCTGTGAAGAGGGTAGTAAGCA
genomic: CATGCCAACAGAGAACTATTGCCTGGATACGACACTCTCTTGAAAATTTGgtatgctaat ... ccattcgcagTTGCAAGCTTGGTGAAAGCAAGATCATCCTCTGTGAAGAGGGTAGTAAGCA
EST: gi|21625969|gb|BQ620890.1|BQ620890
EST:     CATGCCAACAGAGAACTATTGCCTGGATACGACACTCTCTTGAAAATTTG                         TTGCAAGCTTGGTGAAAGCAAGATCATCCTCTGTGAAGAGGGTAGTAAGCC
genomic: CATGCCAACAGAGAACTATTGCCTGGATACGACACTCTCTTGAAAATTTGgtatgctaat ... ccattcgcagTTGCAAGCTTGGTGAAAGCAAGATCATCCTCTGTGAAGAGGGTAGTAAGCA
EST: gi|32908909|gb|CF013722.1|CF013722
EST:     CATGCCAACAGAGAACTATTGCCTGGATACGACACTCTCTTGAAAATTTG                         TTGCAAGCTTGGTGAAAGCAAGATCATCCTCTGTGAAGAGGGTAGTAAGCA
genomic: CATGCCAACAGAGAACTATTGCCTGGATACGACACTCTCTTGAAAATTTGgtatgctaat ... ccattcgcagTTGCAAGCTTGGTGAAAGCAAGATCATCCTCTGTGAAGAGGGTAGTAAGCA
EST: gi|15100644|gb|BI396435.1|BI396435
EST:     CATGCCAACAGAGAACTATTGCCTGGATACGACACTCTCTTGAAAATTTG                         CTGCAAGCTTGGTGAAAGCAAGATCATCCTCTGTGAAGAGGGTAGTAAGCA
genomic: CATGCCAACAGAGAACTATTGCCTGGATACGACACTCTCTTGAAAATTTGgtatgctaat ... ccattcgcagTTGCAAGCTTGGTGAAAGCAAGATCATCCTCTGTGAAGAGGGTAGTAAGCA
EST: gi|111190712|gb|EE288848.1|EE288848
EST:     CATGCCAACAGAGAACTATTGCCTGGATACGACACTCTCTTGAAAATTTG                         TTGCAAGCTTGGTGAAAGCAAGATCATCCTCTGTGAAGAGGGTAGTAAGCA
genomic: CATGCCAACAGAGAACTATTGCCTGGATACGACACTCTCTTGAAAATTTGgtatgctaat ... ccattcgcagTTGCAAGCTTGGTGAAAGCAAGATCATCCTCTGTGAAGAGGGTAGTAAGCA
EST: gi|211167255|gb|FL462156.1|FL462156
EST:     CATGCCAACAGAGAACTATTGCCTGGATACGACACTCTCTTGAAAATTTG                         CTGCAAGCTTGGTGAAAGCAAGATCATCCTCTGTGAAGAGGGTAGTAAGCA
genomic: CATGCCAACAGAGAACTATTGCCTGGATACGACACTCTCTTGAAAATTTGgtatgctaat ... ccattcgcagTTGCAAGCTTGGTGAAAGCAAGATCATCCTCTGTGAAGAGGGTAGTAAGCA