1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
ATTAGGGTGCTTGTCTGTCCACCTGGATACTCCACAATGCTTTTCTGCAGAAATATATGCGGTTGACCTAAATGTTGCTGGAGCACAAGAAGATCTCAAGgtttgtacagcaacatattatgtgtactagtcacatctgtttttacacttcaatctttagaattttgttgaccctttgaactctattgttaagagcttag...
species | Zea mays |
transcript | GRMZM2G167999_T01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: AAATATATGCGGTTGACCTAAATGTTGCTGGAGCACAAGAAGATCTCAAG ATTAATTTGGCTCAAGAGACTCTTCGTGGTTTGCTAATTCATTGGAGTAAAEST: gi|71317699|gb|DR795606.1|DR795606
genomic: AAATATATGCGGTTGACCTAAATGTTGCTGGAGCACAAGAAGATCTCAAGgtttgtacag ... aattgtgcagATTAATTTGGCTCAAGAGACCCTTCGTGGTTTGCTAATTCATTGGAGTAAA
EST: CTAAATGTTGCTGGAGCACAAGAAGATCTCAAG ATTAATTTGGCTCAAGAGACCCTTCGTGGTTTGCTAATTCATTGGAGTAAAEST: gi|211186715|gb|FL252860.1|FL252860
genomic: CTAAATGTTGCTGGAGCACAAGAAGATCTCAAGgtttgtacag ... aattgtgcagATTAATTTGGCTCAAGAGACCCTTCGTGGTTTGCTAATTCATTGGAGTAAA
EST: AAATATATGCGGTTGACCTAAATGTTGCTGGAGCACAAGAAGATCTCAAG ATTAATTTGGCTCAAGAGACTCTTCGTGGTTTGCTAATTCATTGGAGTAAAEST: gi|32919061|gb|CF023873.1|CF023873
genomic: AAATATATGCGGTTGACCTAAATGTTGCTGGAGCACAAGAAGATCTCAAGgtttgtacag ... aattgtgcagATTAATTTGGCTCAAGAGACCCTTCGTGGTTTGCTAATTCATTGGAGTAAA
EST: AGAAGATCTCAAG ATTAATTTGGCTCAAGAGACTCTTCGTGGTTTGCTAATTCATTGGAGTAAA
genomic: AGAAGATCTCAAGgtttgtacag ... aattgtgcagATTAATTTGGCTCAAGAGACCCTTCGTGGTTTGCTAATTCATTGGAGTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTAGGGTGCTTGTCTGTCCACCTGGATACTCCACAATGCTTTTCTGCAGAAATATATGCGGTTGACCTAAATGTTGCTGGAGCACAAGAAGATCTCAAGgtttgtacagcaacatattatgtgtactagtcacatctgtttttacacttcaatctttagaattttgttgaccctttgaactctattgttaagagcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG