1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CAATAAAAAGTGGAAAGAAGGGTTCCATGTAACATCTATGGCCACTGCTGGAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatgattgcttgaccacgcaggcattatttatgctgtgtccttgcgtaaccatattcctctgaattgtaccaactgaggcctgagtatttaaccaaacaacaacaacaaaaaaactgttgtcag
species | Zea mays |
transcript | GRMZM2G164265_T03 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATCCATCGGCGATEST: gi|211270765|gb|FL475765.1|FL475765
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGAT
EST: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATCCATCGGCGATGGEST: gi|37419877|gb|CF647624.1|CF647624
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGG
EST: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAG GTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGG
genomic: GAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatga ... ctgttgtcagGTTGTAGAGTTGGACTTCCTGTACCCTAGCGAAGGCATTCATCGGCGATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATAAAAAGTGGAAAGAAGGGTTCCATGTAACATCTATGGCCACTGCTGGAAATCGCTGGGGCGTAGTTATGTCAAGGAACTCAGGGTTTTCTACTCAGgttaggatgattgcttgaccacgcaggcattatttatgctgtgtccttgcgtaaccatattcctctgaattgtaccaactgaggcctgagtatttaaccaaacaacaacaacaaaaaaactgttgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA