1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GCTTATGTCACTGCCTTCTCCTTCGGTATGGGTTCCATTCCATGGATCATAATGTCTGAGgtataatacccttatcacatatataagctaatataactcataagatgctgaaagcattctgaatgaaaggctgattctgggaactttgcctattgacag
species | Zea mays |
transcript | GRMZM2G160430_T04 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CTGCCTTCTCCTTCGGTATGGGTTCCATTCCTTGGATCATAATGTCTGAG ATCCTTCCGGTTAGCATCAAGTGTGTGGCAGGAAGCTTCGCGACCCTTGCCEST: gi|37376279|gb|CF624650.1|CF624650
genomic: CTGCCTTCTCCTTCGGTATGGGTTCCATTCCATGGATCATAATGTCTGAGgtataatacc ... ctattgacagATCCTTCCGGTTAGCATCAAGTGTGTGGCAGGAAGCTTCGCGACCCTTGCC
EST: TGCCTTCTCCTTCGGTATGGGTTCCATTCC-TGGATCATAATGTTCTGAG ATCCTTCCGGTTAGCATCAAGTGTGTGGCAGGAAGCTTCGCGACCCTTGCEST: gi|37385615|gb|CF629958.1|CF629958
genomic: TGCCTTCTCCTTCGGTATGGGTTCCATTCCATGGATCATAATG-TCTGAGgtataatacc ... ctattgacagATCCTTCCGGTTAGCATCAAGTGTGTGGCAGGAAGCTTCGCGACCCTTGC
EST: CTGCCTTCTCCTTCGGTATGGGTTCCATTCCTTGGATCATAATGTCTGAG ATCCTTCCGGTTAGCATCAAGTGTGTGGCAGGAAGCTTCGCGACCCTTGCC
genomic: CTGCCTTCTCCTTCGGTATGGGTTCCATTCCATGGATCATAATGTCTGAGgtataatacc ... ctattgacagATCCTTCCGGTTAGCATCAAGTGTGTGGCAGGAAGCTTCGCGACCCTTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTATGTCACTGCCTTCTCCTTCGGTATGGGTTCCATTCCATGGATCATAATGTCTGAGgtataatacccttatcacatatataagctaatataactcataagatgctgaaagcattctgaatgaaaggctgattctgggaactttgcctattgacag
- - - - - - - - - - - - - - - - - - - - CATGGA