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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGACGGGTTCAGATTTGATCTAATGGGACATATCATGAAAAAGACAATGgtaagtaagctcatcttcagactgaattaagtatcatgatgatttggtggttaaaccgaaataattcttttggttttatcccatgatctagtacaagtat...

Basic information

species Zea mays
transcript GRMZM2G158043_T02
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158043_T01 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os04g08270.1 (Oryza sativa), 5'ss of exon 6
GTTGACGGGTTCAGATTTGATCTAATGGGACATATCATGAAAAAGACAATGgtaagtaagctcatcttcagactgaattaagtatcatgatgatttggtggttaaaccgaaataattcttttggttttatcccatgatctagtacaagtat----------
||||| ||||||||||||||||| ||||| |||||||||||||  || |||||||||||| |||  |  |   ||          |||  | | | | ||  | ||| |||| | |  ||||| |||  || | |||| ||||| ||| |           
GTTGATGGGTTCAGATTTGATCTTATGGGGCATATCATGAAAAGTACCATGgtaagtaagttcaattcgaagatg----------catattaagtagttgtctgaacagaaagattctttttgttttattctcttgatgtagtaaaagcactgaacgccca

upper sequence: GRMZM2G158043_T01 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA10G34080.1 (Glycine max), 5'ss of exon 14
GTTGACGGGTTCAGATTTGATCTAATGGGACATATCATGAAAAAGACAATGgtaagta----agctcatcttcagactgaattaagtatcatgatgatttggtggttaaaccgaaataattcttttggttttatcccatgatctagtacaagtat
 |||| ||||||||||||||||| ||||| ||||| ||||| |  ||||||||| |||    | ||||  ||   |    | || ||  | | ||           | | |  |||| | |   |  |   ||    |||   | |||    | |
ATTGATGGGTTCAGATTTGATCTTATGGGCCATATAATGAAGAGCACAATGgtatgtattgtaactcactttggcatcttactatgtgacttaatatgaaaacatgttatc--aaatgagtaaataagc--taatgaatgtgtttgtaatgttgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60396203|gb|DN229072.1|DN229072
EST:     TTGACGGGTTCAGATTTGATCTAATGGGACATATCATGAAAAAGACAATG                         ATTAGAGCAAAATCGGCTCTTCAAAGCCTTACAATTGATGAACATGGAGTA
genomic: TTGACGGGTTCAGATTTGATCTAATGGGACATATCATGAAAAAGACAATGgtaagtaagc ... ttgaacacagATTAGAGCAAAATCGGCTCTTCAAAGCCTTACAATTGATGAACATGGAGTA