Sequence
atgc intronic sequence ATGC exonic sequenceTTTCTTGAGATTCATCTTTTCTGGGCTGGCAAGGGCACTTGTTGCATTCCTGCTCAAGGCTACTACGGGCCTGCAATCTCAGCTTTGAGTGCAACTCCAAgtactccccttagatacaatcatcatttaacattttttagataatttcctttgggtaaattaatgcatatatggtttctactttgagaagcacttatggt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G155837_T01 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os04g52630.1 (Oryza sativa), 5'ss of exon 16
TTTCTTGAGATTCATCTTTTCTGGGCTGGCAAGGGCACTTGTTGCATTCCTGCTCAAGGCTACTACGGGCCTGCAATCTCAGCTTTGAGTGCAACTCCAAgtactccccttagatac-aatcatcattt-aacattttttagataatttcctttgggtaaattaatgcatatatggtttctactttgagaagcacttatggt-------------
||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | ||||| ||| ||||| || |||||||||||||||| ||| |||||| ||| || || || ||| | | |||| || || ||||| || || || | | | | || | |
TTTGTTGAGATTCATCTCTTCTGGGCTGGCAAGGGCACTTGCTGCATTCCTGCTCAAGGCTACTATGGGCCCTCTATCTCGGCTCTGAGTTTAAAACCAAgtactccccttaactacgaatcatggtttcaatatgattatgatttatattctggggtcaactattgcatttaa---ttgtaagatcacattcttttctcttgtcttcctgttag
upper sequence: GRMZM2G155837_T01 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os04g52600.1 (Oryza sativa), 5'ss of exon 18
TTTCTTGAGATTCATCTTTTCTGGGCTGGCAAGGGCACTTGTTGCATTCCTGCTCAAGGCTACTACGGGCCTGCAATCTCAGCTTTGAGTGCAACTC---CAAgtactccccttagataca-atcatcattt-aacattttttagataatttcctttgggtaaattaatgcat----------atatggtttctactttgagaagc--acttatggt---
|||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| ||||| | ||||| |||||||||| ||| | || |||||| ||||| || | || || || || || ||| || | |||| | || ||| || ||| | | | | ||| |||| | ||
---CTTGAGATTCATCTCTTCTGGGCTGGCAAGGGCACTTGCTGCATTCCTGGTCAAGGCTACTATGGGCCCACTATCTCGGCTTTGAGTGTAACCCCTGCAGgtactcaccttaactatagataatggttccaatatgaaaatgatgtattttctagggtcagttgtaccattctgcctaagatcacattttttttctaacaagtgaacttcttgtcag
upper sequence: GRMZM2G155837_T01 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os04g52614.1 (Oryza sativa), 5'ss of exon 14
TTTCTTGAGATTCATCTTTTCTGGGCTGGCAAGGGCACTTGTTGCATTCCTGCTCAAGGCTACTACGGGCCTGCAATCTCAGCTTTGAGTGCAACTCC---AAgtactccccttagatacaatcatcatttaacattttttagataatttcctttgggtaaattaatgcatatatggtttctactttgagaagcacttatggt
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---CTTGAGATTCATCTCTTCTGGGCTGGCAAGGGCACTTGCTGCATTCCTACTCAAGGATACTATGGGCCCACTATCTCAGCTCTGAGTGTAATCCCTGCAGgtaccccccttaactacaa--atcat-----ggtcccaagatggattttctag-----------------------------------------------
upper sequence: GRMZM2G155837_T01 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os04g52640.2 (Oryza sativa), 5'ss of exon 17
TTTCTTGAGATTCATCTTTTCTGGGCTGGCAAGGGCACTTGTTGCATTCCTGCTCAAGGCTACTACGGGCCTGCAATCTCAGCTTTGAGTGCAACTCCAAgtactccccttagatacaa-tcatcatt-taacattttttagataatttccttt---gggtaaattaatgcat--------------atatggtttctactttgagaagcacttatggt-----
|| ||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||| ||||| ||||| | ||||||||| ||||| || ||||||| |||||||| ||||| ||||||| | || | | | | || | ||| |||| || | ||||| || ||| | || || | |||| | |
TTCGTTGAGATTCATCTCTTCTGGGCTGGCAAGGGAACTTGCTGCATTCCTACTCAAGGATACTATGGGCCCACTATCTCAGCTCTGAGTTTAAGCCCAAgtattccccttaactacaaatcatcatggttccagtatgaaaacgatgtattttctagggttaactgttgcattccattgtaagattgcatttttttttctaacaggtgaactttttttgttag
upper sequence: GRMZM2G155837_T01 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os04g52606.1 (Oryza sativa), 5'ss of exon 4
TTTCTTGAGATTCATCTTTTCTGGGCTGGCAAGGGCACTTGTTGCATTCCTGCTCAAGGCTACTACGGGCCTGCAATCTCAGCTTTGAGTGCAACTCC---AAgtactccccttagatacaat-catcatttaacattttttagataatttcctttgggtaa------attaa--tgcatatatggtttctactttgaga-agcactt-atggt---------------------
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---GTTGAGATTCATCTATTCTGGGCTGGCAAGGGTACTTGCTGCATTCCTACTCAAGACAATTATGGGCCCTCTATCTCGGCTCTGAGTTTAATCCCTGCAGgtactcctctgaacaacaattcatggttc--cattttgaaaacaatgtattttcagtgatcaactattgagtttcattgtaggccttcattgtaagataacattttattctaacaaatggacttcttttcag
upper sequence: GRMZM2G155837_T01 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA08G25590.1 (Glycine max), 5'ss of exon 20
TTTCTTGAGATTCATCTTTTCTGGGCTGGCAAGGGCACTTGTTGCATTCCTGCTCAAGGCTACTACGGGCCTGCAATCTCAGCTTTGAGTGCAACTCCAAgtactccccttagatacaatcatcattta-acattttttagataa--tttcctt-tgggtaaattaatg-catatatggtttctactttgagaagcacttatggt--------------------------
| ||||||||||||||| || |||||||| || || ||||||||||| || ||||||| || ||||| ||| ||| | ||| | |||| ||| | | | | | | | | | ||||| | ||| | ||| |||| || || ||| | || || ||| | || | | || | |
TATCTTGAGATTCATCTCTTTTGGGCTGGAAAAGGTACTTGTTGCATACCAACTCAAGGTACTTATGGGCCCTTAATTCAAGCAATCCATGCTATTCCAGgtaatactatgaaaaaaattggtaatttagatgtttaattactaacctttcattatgcataatcccttatcagctagatattcaaaatttatatatttttttaatttgatacattgttttgtgttgtacag
upper sequence: GRMZM2G155837_T01 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA08G25600.1 (Glycine max), 5'ss of exon 17
TTTCTTGAGATTCATCTTTTCTGGGCTGGCAAGGGCACTTGTTGCATTCCTGCTCAAGGCTACTACGGGCCTGCAATCTCAGCTTTGAGTGCAACTCCAAgtactccccttagatacaatcatcatttaacattttttagataatttcctttgggtaaat-taatgcatatatggtttctactttgagaagcacttatggt--------------------------------
| ||||||||||||||| || |||||||| || || ||||||||||| || ||||||| || ||||| ||| ||| | ||| | ||| ||| | | | | | | | | | || | || ||| | || | ||||| || |||| | | | | || | | | ||| |
TATCTTGAGATTCATCTCTTTTGGGCTGGAAAAGGTACTTGTTGCATACCAACTCAAGGTACTTATGGGCCCTTAATTCAAGCAATCCATGCTATCCCAGgtaatactatgaaaaaaatttggtaatttagatgttt-aattactaacctttcattatgcataatcccttatcagctagatattcaaaatttatatatatttttaatttgataaattgttttgtgttgtacag
upper sequence: GRMZM2G155837_T01 (Zea mays), 5'ss of exon 14
lower sequence: AT1G56145.2 (Arabidopsis thaliana), 5'ss of exon 18
TTTCTTGAGATTCATCTTTTCTGGGCTGGCAAGGGCACTTGTTGCATTCCTGCTCAAGGCTACTACGGGCCTGCAATCTCAGCTTTGAGTGCAACTCCAAgtactccccttagatacaatcatcatttaacattttttagataatttcctttgggtaaattaatgcatatatggtttctactttgagaagcacttatggt
| ||||| ||||||||||||||||||| || || || || || ||||||||||||||| || ||||| | |||||||| | |||||||||||| ||| || ||||| || | | ||| | | || ||| || | ||| || || || || | | | ||
TACCTTGAAGTTCATCTTTTCTGGGCTGGAAAAGGGACCTGCTGTATTCCTGCTCAAGGCACTTATGGGCCATTAGTCTCAGCTATCAGTGCAACTCCAGgta-------tacatacag-cagaaactttcatgatcttcgtagagtccaatgtatcttctaac---ta-gcggcttttattctctgcag----------
upper sequence: GRMZM2G155837_T01 (Zea mays), 5'ss of exon 14
lower sequence: Vv00s0125g00210.t01 (Vitis vinifera), 5'ss of exon 2
TTTCTTGAGATTCATCTTTTCTGGGCTGGCAAGGGCACTTGTTGCATTCCTGCTCAAGGCTACTACGGGCCTGCAATCTCAGCTTTGAGTGCAACTCCAAgtactccccttagat-acaatcatc-----------atttaacattttttagataatttcctttgggtaaattaatgcatatatggtttctactttgagaagcacttatggt
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TATCTTGAAATTCATCTGTTCTGGGCTGGTAAGGGAACTTGCTGCATACCTTATGATGGTTATTATGGACCATCCATTTCAGCCCTCAGTGTTGTTTCAGgtaacccatttaaatgatagttatagaattcatataatataagatgtcctgactggtgcttcttttgccaactgcaactgaattggttgctgatttattttgctcag-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18383718|gb|BM416918.1|BM416918EST: TGCTCAAGGCTACTACGGGCCTGCAATCTCAGCTTTGAGTGCAACTCCAA ATTTTACCCCTACAGTGCGTAATTCTGCACAGAAGAAGA
genomic: TGCTCAAGGCTACTACGGGCCTGCAATCTCAGCTTTGAGTGCAACTCCAAgtactcccct ... tttctcacagATTTTACCCCTACAGTGCGTAATTCTGCACAGAAGAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTCTTGAGATTCATCTTTTCTGGGCTGGCAAGGGCACTTGTTGCATTCCTGCTCAAGGCTACTACGGGCCTGCAATCTCAGCTTTGAGTGCAACTCCAAgtactccccttagatacaatcatcatttaacattttttagataatttcctttgggtaaattaatgcatatatggtttctactttgagaagcacttatggt
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