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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCAATGCCCAATATGTTTAAAGAATTACTCTCTCGAGAACTTGATGATCGATCCTTATTTCAACCGGATTACATCTTTGgtaggttttcatctcacattttatgcctttcgccagaatttgttatgtgagttgatttctgttttcattttgatgtag

Basic information

species Zea mays
transcript GRMZM2G155123_T02
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155123_T03 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os05g03430.1 (Oryza sativa), 5'ss of exon 14
TGGCAATGCCCAATATGTTTAAAGAATTACTCTCTCGAGAACTTGATGATCGATCCTTATTTCAACCGGATTACATCTTTGgtaggttttcatctcacattttatgcctttcgccagaatttgttatgtgagttgatttctgttttcattttgatgtag
|||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||| |||||  ||||||| ||| ||||| ||||||||   || | | |  | ||| | |||| |        |    |||||  |  |||| ||| |||| ||
TGGCAATGTCCAATATGTTTAAAGAATTACTCTCTTGAGAGCTTGATGATTGATCCTTACTTCAATAGGATTACTTCTCTGgtaagttttcattgtacctctaaatctttttgtcaga-tccacagcattttgtgattatt--tttcttttggatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30306927|gb|CD001600.1|CD001600
EST:     CTCTCGAGAACTTGATGATCGATCCTTATTTCAACCGGATTACATCTTTG                         TTGCACAATTGCAGTGAAGATGTTAATGAGCTTGATGTTAAACCTGATGG
genomic: CTCTCGAGAACTTGATGATCGATCCTTATTTCAACCGGATTACATCTTTGgtaggttttc ... tttgatgtagTTGCACAATTGCAGTGAAGATGTTAATGAGCTTGATGTTAAACCTGATGG