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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATCAAGTTTGCTGTTCACGCACACCCTACATTGTCTGAGGTCCTGGATGAACTCTTCAAAGCAGCCAAGgtatacatcgatcgatgccctcatttcttgctgctatcacgtttcttggccctcaattctgaacaagtgcaagcgacgctctctgtttccaacag

Basic information

species Zea mays
transcript GRMZM2G152958_T02
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152958_T02 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 5'ss of exon 14
GACATCAAGTTTGCTGTTCACGCACACCCTACATTGTCTGAGGTCCTGGATGAACTCTTCAAAGCAGCCAAGgtatacatcgatcgatgccctcatttcttgctgctatcacgtttcttggccctcaattctgaacaagtgcaagcgacgctctctgttt------ccaacag
|||||||||||||||||||| |||||||| |||||||| ||||| ||||| |||||||| ||||||||||||||| || ||         |  ||||| |  ||  | |   |  || | | || || |||||||||  ||||||| |  || | | |||      |||||||
GACATCAAGTTTGCTGTTCATGCACACCCAACATTGTCCGAGGTGCTGGACGAACTCTTTAAAGCAGCCAAGgtacacttcagcg-----ctccatttttctcttgtgtttagaatccttgaccacatttctgaacagctgcaagctattcttttttttttccttcccaacag

upper sequence: GRMZM2G152958_T02 (Zea mays), 5'ss of exon 14
lower sequence: AT3G16950.2 (Arabidopsis thaliana), 5'ss of exon 14
GACATCAAGTTTGCTGTTCACGCACACCCTACATTGTCTGAGGTCCTGGATGAACTCTTCAAAGCAGCCAAGgtatacatcgatcgatgccctcatttcttgctgctatcacgtttcttggccctcaattctgaacaagtgcaagcgacgctctctgtttccaa-cag--------------------------------
||||| || || || ||||| ||||| || ||| | ||||||||||| || ||||| |||||||||||||||||| |     | |  |  ||||||  | |      |    |   |||    || || |   | |||  |  |   | |  ||||  |   || ||                                 
GACATAAAATTGGCAGTTCATGCACATCCAACACTCTCTGAGGTCCTCGACGAACTGTTCAAAGCAGCCAAGgtaaa-gcaaaacagtctcctcatgccat-tgatcagagagcccctttattcttaactgcaatcaatag--atttaagtcctctactaaaaagcaaaagaatcttacactataagttcaatttttcag

upper sequence: GRMZM2G152958_T02 (Zea mays), 5'ss of exon 14
lower sequence: Vv14s0060g01330.t01 (Vitis vinifera), 5'ss of exon 14
GACATCAAGTTTGCTGTTCACGCACACCCTACATTGTCTGAGGTCCTGGATGAACTCTTCAAAGCAGCCAAGgtatacatcgatcgatgccctcatttcttgctgct-atcacgtttcttggccctcaattctgaacaagtgcaagcgacgctctctgtttcca-acag---
||||| |||||||||||||| ||||| || || ||||| ||||| || || |||||||||||| | || ||||||  |     |      |   |   |   ||| |   |  |||  ||     | ||   | || |  |   |  |      | ||||  || |||    
GACATAAAGTTTGCTGTTCATGCACATCCAACCTTGTCCGAGGTGCTTGACGAACTCTTCAAATCTGCTAAGgtaagctcttctttccctctatagacccctctgatcgacctgttaattcattataaagatttaatagattggaaagggagaatatgttgtcatacatagc