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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCAACCGGGGGGCCACGCGCTCCGCGTCCATCACCGCGGCATGGCCGGACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaaagtgaataagcgccgagctcgcttgcctatgcaatggctcaaattcatgcaagcttgtgcttcttggttcatctgcag

Basic information

species Zea mays
transcript GRMZM2G146463_T01
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88754954|gb|DY539095.1|DY539095
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|78080807|gb|DV509219.1|DV509219
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|91050985|gb|EB161403.1|EB161403
EST:     ACGTGGGCATCCGCCCCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|211420211|gb|FL465092.1|FL465092
EST:     ACGTGGGCATCCGCCGCGGCGTCGCCGTGCAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|60396730|gb|DN229595.1|DN229595
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|50330298|gb|CO525424.1|CO525424
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|89759845|gb|DY688531.1|DY688531
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|60394257|gb|DN227127.1|DN227127
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|71430639|gb|DR811689.1|DR811689
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
EST: gi|60353667|gb|DN220640.1|DN220640
EST:     ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAG                         CACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG
genomic: ACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaa ... tcatctgcagCACGAGACGCTACCGGGCTGGTTCACCGGCAGCCTCACGGCGGTGGTCGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTCAACCGGGGGGCCACGCGCTCCGCGTCCATCACCGCGGCATGGCCGGACGTGGGCATCCGCCGCGGCGTGGCCGTGGAGGCGAGGGACGTCTGGAAGgtacgtgaaaagtgaataagcgccgagctcgcttgcctatgcaatggctcaaattcatgcaagcttgtgcttcttggttcatctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG