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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctctatctttgcacggtttagtcattatgcattctaatatacagtagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcag

Basic information

species Zea mays
transcript GRMZM2G135283_T02
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G135283_T04 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os03g52840.3 (Oryza sativa), 5'ss of exon 12
AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATA---TCTGGATGACAAGgtatgctctatctttgcacggtttagtcattatgcattctaatatacagtagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcag
        |||||||||| ||||||| ||||||||| ||||| |||||||| ||||||||||| |||||||| |||||||||||| |   | || |||  |  | | | | |     || || | | | |     | |||| |  | ||   |    ||      | |   | | ||   ||     || ||| |     ||   | | |                         
--------GCCATGATGTGGAGGAATATGCAAAACAGTTCCCCACAATTGGGTTTGAGAAAGAAACCATGAAGTACAAGAACTAAGAAACTTTGAATGGAACAGCAAGgtattgtcctg-acagataaattggc-tccatttttttttagcatgctgcatgcagtatattagttgcctaggccttggct-ccgatcatgaaccatgtttac------------------------

upper sequence: GRMZM2G135283_T04 (Zea mays), 5'ss of exon 15
lower sequence: GLYMA08G37270.1 (Glycine max), 5'ss of exon 15
AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATG------ACAAGgtatgctctat-ctttgcacggtttagtcattatgcattctaatatacagtagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcag
       |||| |||||| ||||| | |||||||||||| ||||| ||||| ||||| ||||  ||||||||  ||||||| | | |   | |        |  ||||||||  ||| |||| | |  |||     || |  ||||| ||  |   | | |  ||     |  ||   ||  |  |    ||    | |   |  |                                 
------CCGCCTTGATGTTGAGGAGTATGCAAAACAATTTCCAACCATTGGTTTTGATAAAGCAACCATGAAGCACAAGAATTGAGAAAAGAAAATTTTCCATTAGgtatgcgttattctttactcattttctcatttgtttattcttattcattttcgttt-gtcccatattggttgacaaggtcatagacaagaggtagttagcc--------------------------------

upper sequence: GRMZM2G135283_T04 (Zea mays), 5'ss of exon 15
lower sequence: Vv00s0211g00070.t01 (Vitis vinifera), 5'ss of exon 15
----------AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctctatctttgcacggtttagtcattatgcattctaatatacag-tagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcag
          |||||||||||| || || || || | |||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |  | |||  |  |   | | |||  ||  ||  |  |||  | |||  || |    |  |   |||| |   ||  | | |  |       | | ||   |                                            
CTGAGATTGCAAAGCTTCGCCACGAGGTGGAAGAGTATGCAAAGCAATTCCCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctattgccagatatatgctttgaccatc-agtagtaatggtttatggattgtaaacagctaaa--gtagatgagtttgataagacagcaatcacaacc----------------------------------------

upper sequence: GRMZM2G135283_T04 (Zea mays), 5'ss of exon 15
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 5'ss of exon 15
AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATAT----CTGGATGACAAGgtatgctctatctttgcacggtttagtcattatgcattctaatatacagtagctcagttgtgaaag-ggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcag
    || |||||||| || ||||| | |||||||||||||||||| ||||| ||||||||||| || |||||||| ||  | | |  |     |  | |||||||||||    | || || |  |   |      ||   || | |||      |  |    |||  ||  |  | |    |     | ||   | |    || | |                              
----CTCCGCCATGAGGTCGAGGAGTATGCAAAACAATTCCCAACTATTGGTTTTGAGAAAGAAACAATGAAATATAAAGATTGAAGTAGTCTTTAAGGACAAGgtatgtcaca-ctctggatcgcgaaacagacat---ttgtgatagttgtcattttgtctgtagaattgaagcaataaaatcacatctagagatgaggtattgga-----------------------------

upper sequence: GRMZM2G135283_T04 (Zea mays), 5'ss of exon 15
lower sequence: Vv00s0211g00080.t01 (Vitis vinifera), 5'ss of exon 4
AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctctatctttgc---acggtttagtcattatgcattctaatatacagtagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcag
        |     ||||   ||   ||||||  ||    | ||      |   |      |  || |||   | | ||  || |  ||   ||  |   | ||||   | ||| ||     |||  ||  | ||||||    |||   ||  |  |   ||    || |       | ||                                                      
--------GTTTCTATGTTT-GGTTCTTGCAACCCAGGGACAAAgttgaaggactttcttggccacaatgcggt-ctagccctcacctccaaat--ctgaggatgcaaaagcttcgccatgaggtggagggagtatgcaaagcaattcccaacaattggatttgagaaagaaaccatgaag------------------------------------------------------

upper sequence: GRMZM2G135283_T04 (Zea mays), 5'ss of exon 15
lower sequence: Vv00s0211g00120.t01 (Vitis vinifera), 5'ss of exon 15
----------AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctctatctttgcacggtttagtcattatgcattctaatatacagtagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcag
          ||||||||||||||| || ||||| | |||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |  | |||  |  |   | | |||  ||  ||  |  |||  | |||  || |    |  |       ||  ||  | | |  |       | | ||   |                                            
CTGAGATTGCAAAGCTTCGCCATGAGGTGGAGGAGTATGCAAAGCAATTCCCAACAATTGGATTTGAGAAAGAAACCATGAAGTACAAGAACTAATGTAGgtatgctattgccagatatatgctttgaccatc-agtagtaatggtttatggattgtaaacagctaga-gtagatgagcttgataagacagcaatcacaacc----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71299009|gb|DR785497.1|DR785497
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|108953686|gb|EC364842.1|EC364842
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGACGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|6449712|gb|AW181252.1|AW181252
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|67017024|gb|CO445773.1|CO445773
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|37391313|gb|CF632898.1|CF632898
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCCTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|113703934|gb|EE681438.1|EE681438
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCCTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|166529933|gb|EG245817.1|EG245817
EST:     AAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCCTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: AAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|148945830|gb|EC891119.2|EC891119
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATTTGGATGACAAG                         AAGAGAAGGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|60353152|gb|DN220125.1|DN220125
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|5804699|gb|AI979669.1|AI979669
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|211373640|gb|FL261169.1|FL261169
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|5929055|gb|AW056347.1|AW056347
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCCC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|6194529|gb|AW146633.1|AW146633
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGA-TGAGGTCACTCTTCTTGCA
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCA
EST: gi|148928192|gb|EE284698.2|EE284698
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATTTGGATGACAAG                         AAGAGAATGAGGTCACNNNNNNNGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|148973318|gb|EE024403.2|EE024403
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATTTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|5713711|gb|AI943703.1|AI943703
EST:     GATTTGAGAAAGAGACCATGAAATCCAAGAACTAATATCTGGATGCCAAG                         AAGAGAATGAGGTCTCTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCNC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|60399360|gb|DN232174.1|DN232174
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATTTGGATGACAAG                         AAGAGAATGAGGTCATTTTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|40336482|gb|CK370552.1|CK370552
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCCTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|5757273|gb|AI964560.1|AI964560
EST:     GATTTGAGAAAGAGGCCATGAAATACAAGAACTAATATCTGGATGCCAAG                         AAGAGAATGAGGTCCCTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCCC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|148958251|gb|EC904465.2|EC904465
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATTTGGATGACAAG                         AAGAGAATGAGGTCACNNNNNNNGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|5915216|gb|AW052857.1|AW052857
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCCC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|6102053|gb|AW126523.1|AW126523
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|149089956|gb|EE179245.2|EE179245
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATTTGGATGACAAG                         AAGAGAATGAGGTCACNNNNNNNGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|60344488|gb|DN211461.1|DN211461
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|32867520|gb|CF007202.1|CF007202
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|60343439|gb|DN210412.1|DN210412
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|37393418|gb|CF633973.1|CF633973
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCCTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|60357206|gb|DN224179.1|DN224179
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         A-GA-A-TGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|89249961|gb|DY621747.1|DY621747
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATTTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|211373639|gb|FL261168.1|FL261168
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|60352787|gb|DN219760.1|DN219760
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|113700941|gb|EE678445.1|EE678445
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCCTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|67013913|gb|CO442662.1|CO442662
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|14204327|gb|BG838004.1|BG838004
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCCTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|32850232|gb|CD989913.1|CD989913
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|60354435|gb|DN221408.1|DN221408
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
EST: gi|211502770|gb|FL432440.1|FL432440
EST:     GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAG                         AAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC
genomic: GATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctcta ... ccatttgcagAAGAGAATGAGGTCACTCTTCTTGCAGTAAGCATTCGAAGCAAGATGCCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACAATTCCCAACAATTGGATTTGAGAAAGAGACCATGAAATACAAGAACTAATATCTGGATGACAAGgtatgctctatctttgcacggtttagtcattatgcattctaatatacagtagctcagttgtgaaagggggtaccggagctggaactgccgttttcttacttggctgagcgcttccctcttatccatttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC