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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCTTGTCGAACAGCTATGAGGGGTAGTTTCCCACTTAATGGCACTTACTTTCAAGTCAATGAGgtaaacagagtgacatttaatgtcttactcctagtactgctcctaagcctcctgtgtcaatggatacactttttgtgacgtgtggctgtccatacag

Basic information

species Zea mays
transcript GRMZM2G131756_T02
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G131756_T01 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os05g37350.1 (Oryza sativa), 5'ss of exon 17
GTTCCTTGTCGAACAGCTATGAGGGGTAGTTTCCCACTTAATGGCACTTACTTTCAAGTCAATGAGgtaaacagagtgacatttaatgtcttactcctagtactgctcctaa--gcctcctgtgtcaatggatacactt---tttgtgacgtgtgg--ctgtccatacag
|||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||  | |||| | || |       ||    ||| |  |     |   ||   |  ||    |  ||| | ||   |||  ||  | |||   |||   | |||
GTTCCTTGCCGAACAGCCATGAGAGGTAGTTTTCCACTTAATGGCACTTACTTTCAAGTTAATGAGgtatgctgagttatatctgtcaaagtatgagtaggatagtggagagttgctatccatgggcctttatagagttgactttacgatttctggatttgtttttgcag

upper sequence: GRMZM2G131756_T01 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os05g37410.1 (Oryza sativa), 5'ss of exon 18
GTTCCTTGTCGAACAGCTATGAGGGGTAGTTTCCCACTTAATGGCACTTACTTTCAAGTCAATGAGgtaaacagagtgacatttaatgtcttactcctagtactgc------tcctaagcctcctgtgtcaatggatacactttttgtgacgtgtgg--ctgtccatacag
|||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||  | |||| | || |       ||    ||| |  |       |    | ||    |  |  || ||       |||  ||  | |||   |||   | |||
GTTCCTTGCCGAACAGCCATGAGAGGTAGTTTTCCACTTAATGGCACTTACTTTCAAGTTAATGAGgtatgctgagttatatctgtcaaagtatgagtaggatagtggagagttgctatccatgggcctttatagagttggactttacgatttctggatttgtttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211540330|gb|FL320588.1|FL320588
EST:     CTATGAGGGGTAGTTTCCCACTTAACGGCACTTACTTTCAAGTCAATGAG                         GTATTTGCTGACCACAGATCTAGCCACAACCCAATCCATGTGGAAAGGGAG
genomic: CTATGAGGGGTAGTTTCCCACTTAATGGCACTTACTTTCAAGTCAATGAGgtaaacagag ... gtccatacagGTATTTGCTGACCACAGATCTAGCCACAACCCAATCCATGTGGAAAGGGAG
EST: gi|211151599|gb|FL276380.1|FL276380
EST:     CTATGAGGGGTAGTTTCCCACTTAATGGCACTTACTTTCAAGTCAATGAG                         GTATTTGCTGACCACAGATCTAGCCACAACCCAATCCATGTGGAAAGGGAG
genomic: CTATGAGGGGTAGTTTCCCACTTAATGGCACTTACTTTCAAGTCAATGAGgtaaacagag ... gtccatacagGTATTTGCTGACCACAGATCTAGCCACAACCCAATCCATGTGGAAAGGGAG
EST: gi|60339031|gb|DN206004.1|DN206004
EST:     CTATGAGGGGTAGTTTCCCACTTAACGGCACTTACTTTCAAGTCAATGAG                         GTATTTGCTGACCACAGATCTAGCCACAACCCAATCCATGTGGAAAGGGAG
genomic: CTATGAGGGGTAGTTTCCCACTTAATGGCACTTACTTTCAAGTCAATGAGgtaaacagag ... gtccatacagGTATTTGCTGACCACAGATCTAGCCACAACCCAATCCATGTGGAAAGGGAG
EST: gi|60347567|gb|DN214540.1|DN214540
EST:     CTATGAGGGGTAGTTTCCCACTTAATGGCACTTACTTTCAAGTCAATGAG                         GTATTTGCTGACCACAGATCTAGCCACAACCCAATCCATGTGGAAAGGGAG
genomic: CTATGAGGGGTAGTTTCCCACTTAATGGCACTTACTTTCAAGTCAATGAGgtaaacagag ... gtccatacagGTATTTGCTGACCACAGATCTAGCCACAACCCAATCCATGTGGAAAGGGAG
EST: gi|60394289|gb|DN227159.1|DN227159
EST:     CTTAACGGCACTTACTTTCAAGTCAATGAG                         GTATTTGCTGACCACAGATCTAGCCACAACCCAATCCATGTGGAAAGGGAG
genomic: CTTAATGGCACTTACTTTCAAGTCAATGAGgtaaacagag ... gtccatacagGTATTTGCTGACCACAGATCTAGCCACAACCCAATCCATGTGGAAAGGGAG
EST: gi|9731007|gb|BE509759.1|BE509759
EST:     TTAATGGCACTTACTTTCAAGTCAATGAG                         GTATTTGCTGACCACAGATCTAGCCACAACCCAATCCATGTGGAAAGGGAG
genomic: TTAATGGCACTTACTTTCAAGTCAATGAGgtaaacagag ... gtccatacagGTATTTGCTGACCACAGATCTAGCCACAACCCAATCCATGTGGAAAGGGAG
EST: gi|5901234|gb|AW042334.1|AW042334
EST:     CTATGAGGGGTAGTTTCCCACTTAATGGCACTTACTTTCAAGTCAATGAG                         GTATTTGCTGACCACAGATCTAGCCACAACCCAATCCATGTGGAAAGGGAG
genomic: CTATGAGGGGTAGTTTCCCACTTAATGGCACTTACTTTCAAGTCAATGAGgtaaacagag ... gtccatacagGTATTTGCTGACCACAGATCTAGCCACAACCCAATCCATGTGGAAAGGGAG
EST: gi|60353813|gb|DN220786.1|DN220786
EST:     GAGGGGTAGTTTCCCCACTTAATGGCACTTACTTTCAAGTCAATGAAG                         GTATTTGCTGACCACAGATCTAGCCACAACCCAATCCATGTGGAAAGGGA
genomic: GAGGGGTAGTTT-CCCACTTAATGGCACTTACTTTCAAGTCAATG-AGgtaaacagag ... gtccatacagGTATTTGCTGACCACAGATCTAGCCACAACCCAATCCATGTGGAAAGGGA