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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGTGTTGCTGTTCCCTGCCACATACTCAAGTTCTGGGCTTTCTTAGGAATCATGCTTCAGgtaaatataatacaacgccagatgctgtggatcaatatccaacatttatgtttttctttactcattttttcctttattagttcttttttcattcgctata...

Basic information

species Zea mays
transcript GRMZM2G130749_T01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130749_T01 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os05g10810.1 (Oryza sativa), 5'ss of exon 14
TTATGTGTTGCTGTTCCCTGCCACATACTCAAGTTCTGGGCTTTCTTAGGAATCATGCTTCAGgtaaatat----aatacaacgccagatgctgtggatcaatatccaacatttatgtt-tttctttactcattttttcctttattagt---tcttttttcattc-gctata---------------------------------------------------
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ATATGTGTCGCTGTTCCCTGCCGCATTCTCAAGTTCTGGGCATTCTTAGGAATAATGCTACAGgtacgtgttaaaaaaattacactgaatagtatgctgtaaaacgtg-cactcatgcaatctcttgtttttttcctttctgtataaataaatgtgtgcccattctgcagtatgacatagaactgttctcatgcagtctcctttttttcccccttgtttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166524704|gb|EG322014.1|EG322014
EST:     TTCCCTGCCACATACTCAAGTTCTGGGCTTTCTTAGGAATCATGCTTCAG                         ATTCCCCTCATCATATTGACATCATACCTC
genomic: TTCCCTGCCACATACTCAAGTTCTGGGCTTTCTTAGGAATCATGCTTCAGgtaaatataa ... tttttaccagATTCCCCTCATCATATTGACATCATACCTC
EST: gi|88756047|gb|DY540188.1|DY540188
EST:     TTCCCTGCCACATACTCAAGTTCTGGGCTTTCTTAGGAATCATGCTTCAG                         ATTCCCCTCATCATATTGACATCATACCTCAAAA
genomic: TTCCCTGCCACATACTCAAGTTCTGGGCTTTCTTAGGAATCATGCTTCAGgtaaatataa ... tttttaccagATTCCCCTCATCATATTGACATCATACCTCAAAA
EST: gi|211193694|gb|FL010949.1|FL010949
EST:     TTCCCTGCCACATACTCAAGTTCTGGGCTTTCTTAGGAATCATGCTTCAG                         ATTCCCCTCATCATATTGACATCATACCTCAAAAATAAATTCAGTGACACA
genomic: TTCCCTGCCACATACTCAAGTTCTGGGCTTTCTTAGGAATCATGCTTCAGgtaaatataa ... tttttaccagATTCCCCTCATCATATTGACATCATACCTCAAAAATAAATTCAGTGACACA