1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AATGGACTGGAAAGAAGAGGGTACAAGGAGGTTGGTTTCCTTAGAGAGGTCGACGAAGTAGTGAGAACAGgcaaatgctattcagcaccctcatcttcattcgtttgttggactatctgtttctgaagatcctaattaccttcaacttgctacag
species | Zea mays |
transcript | GRMZM2G111579_T01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GTACAAGGAGGTTGGTTTCCTTAGAGAGGTCGACGAAGTAGTGAGAACAG GAGTGACGCCTGCGGAGAAGCTGCTGAACCTGTACGAGAC-AAGTGGCAACEST: gi|60341874|gb|DN208847.1|DN208847
genomic: GTACAAGGAGGTTGGTTTCCTTAGAGAGGTCGACGAAGTAGTGAGAACAGgcaaatgcta ... cttgctacagGAGTGACGCCTGCGGAGAGGCTGCTGAACCTGTACGAGACCAAGTGGCAAC
EST: GTACAAGGAGGTTGGTTTCCTTAGAGAGGTCGACGAAGTAGTGAGAACAG GAGTGACGCCTGCGGAGAGGCTGCTGAACCTGTACGAGACCAAGTGGCAACEST: gi|22715441|gb|BU197765.1|BU197765
genomic: GTACAAGGAGGTTGGTTTCCTTAGAGAGGTCGACGAAGTAGTGAGAACAGgcaaatgcta ... cttgctacagGAGTGACGCCTGCGGAGAGGCTGCTGAACCTGTACGAGACCAAGTGGCAAC
EST: GTACAAGGAGGTTGGTTTCCTTAGAGAGGTCGACGAAGTAGTGAGAACAG GAGTGACGCCTGCGGAGAGGCTGCTGAACCTGTACGAGACCAAGTGGCAACEST: gi|45568249|gb|CK985975.1|CK985975
genomic: GTACAAGGAGGTTGGTTTCCTTAGAGAGGTCGACGAAGTAGTGAGAACAGgcaaatgcta ... cttgctacagGAGTGACGCCTGCGGAGAGGCTGCTGAACCTGTACGAGACCAAGTGGCAAC
EST: GTACAAGGAGGTTGGTTTCCTTAGAGAGGTCGACGAAGTAGTGAGAACAG GAGTGACGCCTGCGGAGAGGCTGCTGAACCTGTACGAGACCAAGTGGCAACEST: gi|17929933|gb|BM266893.1|BM266893
genomic: GTACAAGGAGGTTGGTTTCCTTAGAGAGGTCGACGAAGTAGTGAGAACAGgcaaatgcta ... cttgctacagGAGTGACGCCTGCGGAGAGGCTGCTGAACCTGTACGAGACCAAGTGGCAAC
EST: GTACAAGGAGGTTGGTTTCCTTAGAGAGGTCGACGAAGTAGTGAGAACAG GAGTGACGCCTGCGGAGAGGCTGCTGAACCTGTACGAGACCAAGTGGCAACEST: gi|18964392|gb|BM660979.1|BM660979
genomic: GTACAAGGAGGTTGGTTTCCTTAGAGAGGTCGACGAAGTAGTGAGAACAGgcaaatgcta ... cttgctacagGAGTGACGCCTGCGGAGAGGCTGCTGAACCTGTACGAGACCAAGTGGCAAC
EST: GTACAAGGAGGTTGGTTTCCTTAGAGAGGTCGACGAAGTAGTGAGAACAG GAGTGACGCCTGCGGAGAGGCTGCTGAACCTGTACGAGACCAAGTGGCAACEST: gi|21987852|gb|BQ779380.1|BQ779380
genomic: GTACAAGGAGGTTGGTTTCCTTAGAGAGGTCGACGAAGTAGTGAGAACAGgcaaatgcta ... cttgctacagGAGTGACGCCTGCGGAGAGGCTGCTGAACCTGTACGAGACCAAGTGGCAAC
EST: GTACAAGGAGGTTGGTTTCCTTAGAGAGGTCGACGAAGTAGTGAGAACAG GAGTGACGCCTGCGGAGAGGCTGCTGAACCTGTACGAGACCAAGGGGCAACEST: gi|18179132|gb|BM380342.1|BM380342
genomic: GTACAAGGAGGTTGGTTTCCTTAGAGAGGTCGACGAAGTAGTGAGAACAGgcaaatgcta ... cttgctacagGAGTGACGCCTGCGGAGAGGCTGCTGAACCTGTACGAGACCAAGTGGCAAC
EST: GTACAAGGAGGTTGGTTTCCTTAGAGAGGTCGACGAAGTAGTGAGAACAG GAGTCACGCCTGCGGAGAGGCTGCTGAACCTGTACGAGACCAAGTGGCAACEST: gi|67016596|gb|CO445345.1|CO445345
genomic: GTACAAGGAGGTTGGTTTCCTTAGAGAGGTCGACGAAGTAGTGAGAACAGgcaaatgcta ... cttgctacagGAGTGACGCCTGCGGAGAGGCTGCTGAACCTGTACGAGACCAAGTGGCAAC
EST: GTACAAGGAGGTTGGTTTCCTTAGAGAGGTCGACGAAGTAGTGAGAACAG GAGTGACGCCTGCGGAGAGGCTGCTGAACCTGTACGAGACCAAGTGGCAAC
genomic: GTACAAGGAGGTTGGTTTCCTTAGAGAGGTCGACGAAGTAGTGAGAACAGgcaaatgcta ... cttgctacagGAGTGACGCCTGCGGAGAGGCTGCTGAACCTGTACGAGACCAAGTGGCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGACTGGAAAGAAGAGGGTACAAGGAGGTTGGTTTCCTTAGAGAGGTCGACGAAGTAGTGAGAACAGgcaaatgctattcagcaccctcatcttcattcgtttgttggactatctgtttctgaagatcctaattaccttcaacttgctacag
- - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - GAGAGG