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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttcttcagttatagtattatcttagatggtatatcaattgatcattgcgtaacttgataatttaaatttctgcatgtcttgcag

Basic information

species Zea mays
transcript GRMZM2G108829_T03
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108829_T01 (Zea mays), 5'ss of exon 13
lower sequence: LOC_Os02g47225.1 (Oryza sativa), 5'ss of exon 10
ATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttcttcagttatagtattatcttagatggtatatcaattgatcattgcgtaacttgataatttaaatttctgcatgt-cttgcag
 |||  |||| ||||||||| ||||| |||||| ||| |||||| || ||| | ||||| || |||||||||||| || || |    ||  |  ||||||  ||   |   ||| ||   | | || || || |   |||||   |     |||||
GTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCAGTCGACCTGATTTCAgtaagttctacaattctg---ttgccccagatggcgtacttaa-aatctttagattattttattatatttgtttctttctacatctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60349468|gb|DN216441.1|DN216441
EST:     TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA                         TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
EST: gi|32871065|gb|CF010747.1|CF010747
EST:     TGGCCGAGGTGATGACAACAGCCAGTAGC-ATGCAATTGAC-T-ATCTCA                         TCACTATGC-CATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
EST: gi|32932540|gb|CF037352.1|CF037352
EST:     TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA                         TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
EST: gi|71304777|gb|DR788504.1|DR788504
EST:     TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA                         TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGG
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGG
EST: gi|32832603|gb|CD972281.1|CD972281
EST:     GGCCGACGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA                         TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
genomic: GGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
EST: gi|211496287|gb|FL041699.1|FL041699
EST:     TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA                         TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
EST: gi|31350422|gb|CD434779.1|CD434779
EST:     TGGCCGAGGTGATGACCACAGCCAGTAGCGATGCAATTGATCTCATCTCA                         TCACCTATGCTCATGGGATCCTAACAAG
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCAC-TATGCTCATGGGATCCTAGCAAG
EST: gi|32870331|gb|CF010013.1|CF010013
EST:     TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA                         TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
EST: gi|32869779|gb|CF009461.1|CF009461
EST:     TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA                         TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
EST: gi|67011156|gb|CO439905.1|CO439905
EST:     TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGATCTCATCTCA                         TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
EST: gi|5325074|gb|AI783265.1|AI783265
EST:     TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA                         TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
EST: gi|5846886|gb|AI999969.1|AI999969
EST:     TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA                         TCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGCAAGAGACCAAAGGCCGCAGAAGTCCTC
EST: gi|5932684|gb|AW057045.1|AW057045
EST:     TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGATCTCATCTCA                         TCACTATGCTCATGGGATCCTAGC
genomic: TGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCAgtaagttctt ... tgtcttgcagTCACTATGCTCATGGGATCCTAGC