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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCAAGAAGGGATACGTTCTCGCATGTTTAAGTCAGTTATCACTGCGAACCATCCTGAATTTTCAAGCATGAGACAACAGgtaatgatcttctcaacttataagctataatgagcatttttttctattttatatcaataactatagtcttttgtttggaatagttgtcttaaccttattctggtttgaatatgttcatacag

Basic information

species Zea mays
transcript GRMZM2G107696_T02
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107696_T02 (Zea mays), 5'ss of exon 14
lower sequence: Vv19s0014g03920.t01 (Vitis vinifera), 5'ss of exon 11
GGGCAAGAAGGGATACGTTCTCGCATGTTTAAGTCAGTTATCACTGCGAACCATCCTGAATTTTCAAGCATGAGACAACAGgta-atgatcttctcaacttataagctataatgagcatttttttctattttatatcaataactatagtcttttgtttggaatagttgtcttaaccttattctggtttgaatatgttcatacag
   |||||||| ||||   |||| ||||| ||| |||||||  |||| | ||||||||||||||| || |||||||| ||||||  |   | |  |  ||  | |  | |    |  |     || |   ||   ||| |     | |    || ||| ||  |  |   |||  ||  |||                      
AAACAAGAAGGCATACCCCCTCGTATGTTCAAGGCAGTTATTGCTGCCAGCCATCCTGAATTTTCTAGTATGAGACAGCAGgtatgtacaccttgcttctagttatatcttgataaaacacgcttttgacttgcttcattg-tggtcgagacttattttgatgacctcatttactctccttc----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71330491|gb|DR802012.1|DR802012
EST:     AGTCAGTTATCACTGCGAACCATCCTGAATTTTCAAGCATGAGACAACAG                         GATGTCCTTGAATTCTTCCTTCACCTTATTGACAGAGTTGAGAAGGCAAAC
genomic: AGTCAGTTATCACTGCGAACCATCCTGAATTTTCAAGCATGAGACAACAGgtaatgatct ... gttcatacagGATGTCCTTGAATTCTTCCTTCACCTTATTGACAGAGTTGAGAAGGCAAAC
EST: gi|211413392|gb|FL397573.1|FL397573
EST:     AGTCAGTTATCACTGCGAACCATCCTGAATTTTCAAGCATGAGACAACAG                         GATGTCCTTGAATTCTTCCTTCACCTTATTGACAGAGTTGAGAAGGCAAAC
genomic: AGTCAGTTATCACTGCGAACCATCCTGAATTTTCAAGCATGAGACAACAGgtaatgatct ... gttcatacagGATGTCCTTGAATTCTTCCTTCACCTTATTGACAGAGTTGAGAAGGCAAAC