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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGTTGATTCTGGAGATTTTACTAAGGGGATATACACTTTTGATGATGTTGTCCTACCTTTGCCTGGgtaatatctattcccttctatttgtactttcattttttgtttatgcttatttgtatggcatgcag

Basic information

species Zea mays
transcript GRMZM2G096553_T02
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G096553_T02 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os05g43374.2 (Oryza sativa), 5'ss of exon 8
ATAGTTGATTCTGGAGATTTTACTAAGGGGATATACACTTTTGATGATGTTGTCCTACCTTTGCCTGGgtaatatctattcc-cttctat---ttgtactttcatttt---ttgtttatgcttatttgtatggcatgcag------------------
||||||||||||| ||||||    |||||  | ||||| ||||| ||||||||||| |||||||||||||| |  | ||||| | || ||   ||  | |||||| ||   |    |      || | |||||  |||                    
ATAGTTGATTCTGAAGATTTATTGAAGGGTGTCTACACATTTGAAGATGTTGTCCTTCCTTTGCCTGGgtatttaccattccacatccataacttcaattttcatattgaatcacattgagaaatatatatggtgtgcttatttctgtaaacatgcag

upper sequence: GRMZM2G096553_T02 (Zea mays), 5'ss of exon 14
lower sequence: Vv14s0030g01850.t01 (Vitis vinifera), 5'ss of exon 10
ATAGTTGATTCTGGAGATTTTACTAAGGGGATATACACTTTTGATGATGTTGTCCTACCTTTGCCTGGgtaatatctattcccttctatttgt-actttcattttttgtttatgcttatttgtatggcatgcag-----------------------
    | ||| | | ||||||   ||  ||||  || ||  |||||||||||||||| |||||||||||||||     |    |     || ||  |||| ||||  |    |   || ||||  |  |   |                         
GCTCTGGATGCAGAAGATTTACTTACTGGGAATTATACAATTGATGATGTTGTCCTTCCTTTGCCTGGgtaaggatgacctacaaaatttagttgcttttatttcataaagaccattttttgcttttctctctcttctaacactgttattttgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60347237|gb|DN214210.1|DN214210
EST:     CTACCTTTGCCTGG                         TTCACAAGCATTGTTTCCTGGGAATGAAATTGCCGAGATTTACCATGAAAT
genomic: CTACCTTTGCCTGGgtaatatcta ... tggcatgcagTTCACAAGCATTGTTTCCTGGGAATGAAATTGCCGAGATTTACCATGAAAT
EST: gi|211061095|gb|FL320235.1|FL320235
EST:     TTTACTAAGGGGATATACACTTTTGATGATGTTGTCCTACCTTTGCCTGG                         TTCACAAGCATTGTTTCMTGGGAATGAAATTGCCGAGATTTACCATGAAAT
genomic: TTTACTAAGGGGATATACACTTTTGATGATGTTGTCCTACCTTTGCCTGGgtaatatcta ... tggcatgcagTTCACAAGCATTGTTTCCTGGGAATGAAATTGCCGAGATTTACCATGAAAT
EST: gi|13149317|gb|BG319639.1|BG319639
EST:     TTTACTAA-GGGATATACAC-TTTGATGAT-MTMTCCTACC-TTGCCTGG                         TTCACAAGCATTGTTTCCTGGGAATGAAATTGCCGAGATTTACCATGAAAT
genomic: TTTACTAAGGGGATATACACTTTTGATGATGTTGTCCTACCTTTGCCTGGgtaatatcta ... tggcatgcagTTCACAAGCATTGTTTCCTGGGAATGAAATTGCCGAGATTTACCATGAAAT
EST: gi|6031366|gb|AW076223.1|AW076223
EST:     TTTACTAAGGGGATATACACTTTTGATGATGTTGTCCTACCTTTGCCTGG                         TTCACAAGCATTGTTTCCTGGGAATGAAATTGCCGAGATTTACCATGAAAT
genomic: TTTACTAAGGGGATATACACTTTTGATGATGTTGTCCTACCTTTGCCTGGgtaatatcta ... tggcatgcagTTCACAAGCATTGTTTCCTGGGAATGAAATTGCCGAGATTTACCATGAAAT