Sequence
atgc intronic sequence ATGC exonic sequenceTCACGAGGTCAATGAGCGAGTGAGAACTGGAATTTGGGTTGGAGACTGCTTTATCTATAACAACTCGTTGTGGCGCCTAAATTATTGTGTTGGTGGTGAGgtaaaaatagtctactccttgaaaacgttttcttctgtttaagttctctatatggccactttgtgagtcacgacttcaattgtttacacagttataagctttgtacttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G095348_T03 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 5'ss of exon 15
TCACGAGGTCAATGAGCGAGTGAGAACTGGAATTTGGGTTGGAGACTGCTTTATCTATAACAACTCGTTGTGGCGCCTAAATTATTGTGTTGGTGGTGAGgtaaaaatagtctactccttg-aaaacgttttcttctgtttaagttctctatatggc--cactttgtgagtcacgacttcaattgtttacacagttataagctttgtacttacag
||| ||||| |||||||||||| | || || || |||||||||||||||||||| |||||||| || | |||||||| || |||||||||||||| |||||| | || || | |||| || || | |||| || |||| | || | | ||| | | |||||| || | || | || ||| ||| |
TCATGAGGTTAATGAGCGAGTGCGGACAGGGATCTGGGTTGGAGACTGCTTTATTTATAACAATTCATCATGGCGCCTGAACTATTGTGTTGGTGGCGAGgtatatattgtgtgctccatgcaagaatttttattttgttaatgtattttctattgtagtattttgtgcactacaaatttatcccgttgtacatttacag---------------
upper sequence: GRMZM2G095348_T03 (Zea mays), 5'ss of exon 15
lower sequence: GLYMA13G43680.1 (Glycine max), 5'ss of exon 15
TCACGAGGTCAATGAGCGAGTGAGAACTGGAATTTGGGTTGGAGACTGCTTTATCTATAACAACTCGTTGTGGCGCCTAAATTATTGTGTTGGTGGTGAGgtaaaaatagtctactccttgaaaacgttttcttctgtttaagttctctatatggccactttgt-gagtcacga----cttcaattgtttacacagttataagctttgtacttacag
|| || | ||||| || || ||||| || || |||||||| || ||||||||||| ||||| || | ||| | || ||||| |||||||||||||||||| || ||| ||| | | || | | | ||| | | || || | || || | | | | | | | || | || | |||
ACATGAAATGAATGAACGTGTCAGAACAGGCATCTGGGTTGGGGATTGCTTTATCTACAACAATTCCTCTTGGAGACTTAATTACTGTGTTGGTGGTGAGgtattaac--tcttttcccttctagatttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatttag--
upper sequence: GRMZM2G095348_T03 (Zea mays), 5'ss of exon 15
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 19
TCACGAGGTCAATGAGCGAGTGAGAACTGGAATTTGGGTTGGAGACTGCTTTATCTATAACAACTCGTTGTGGCGCCTAAATTATTGTGTTGGTGGTGAGgtaaaaatagtct----actccttgaaaacgttttcttctgtttaagttctctatatggccactttgtgagtcacgacttcaattgtttacacagttataagctttgtacttacag
| || |||||| || || | ||||| | |||||||| || || |||||||||| |||||| | ||| | || ||||| ||||||||||||||||||| | | | | | |||| | || ||||| || | | | | | ||| || ||| ||| | || | | ||||
CAATGAAACCAATGAACGTGTTCGGACTGGCTTATGGGTTGGGGATTGTTTTATCTATACCAACTCTTCTTGGAGGCTTAATTACTGTGTTGGTGGTGAGgtaaggctcatttctaggtttttggaaagaaacgttttatgttt---tttattttgttgtaa--ttgagattcagtactcctcttatat-tacag---------------------
upper sequence: GRMZM2G095348_T03 (Zea mays), 5'ss of exon 15
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 15
TCACGAGGTCAATGAGCGAGTGAGAACTGGAATTTGGGTTGGAGACTGCTTTATCTATAACAACTCGTTGTGGCGCCTAAATTATTGTGTTGGTGGTGAGgtaaaa---atagtctactc----cttgaaaacgttttcttctgtttaagttctctatatggccactttgtgagtcac---gacttcaattgtttacacagttataagctttgtacttacag
|| ||| ||||| |||| |||||||| || |||||||||||||| || || || |||||||| | ||||| || ||||| ||||||||||| |||||| || ||| || | ||||||| ||| | | ||| | | || ||| || || | | || | ||||| | | | ||| | |
CCATGAGACAAATGAAAGAGTTAGAACTGGTATATGGGTTGGAGACTGTTTCATTTACAACAACTCCTCTTGGCGGCTTAATTACTGTGTTGGTGGCGAGgtattgtgtattgtccacccttgtcttgaaagtatttccatatgtgcagatg------atatccatttcatggatttcttggagcttttttgtt-aaataaccatatgttccag--------
upper sequence: GRMZM2G095348_T03 (Zea mays), 5'ss of exon 15
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 15
TCACGAGGTCAATGAGCGAGTGAGAACTGGAATTTGGGTTGGAGACTGCTTTATCTATAACAACTCGTTGTGGCGCCTAAATTATTGTGTTGGTGGTGAGgta-aaaatagtctactccttgaaaacgttttcttctgtttaagttctctatatggccactttgtgagtcacgacttcaattgtttacacagttataagctttgtacttacag
|| || | ||||||||||| ||||||||||| |||||||| |||||||| || || || ||||| | ||||| || || ||||||||||||||||||||| || | ||| | ||| | || || | | | || | ||| || | | || ||||| | ||||||| | || || | | |
CCATGAAATAAATGAGCGAGTCAGAACTGGAATATGGGTTGGGGACTGCTTCATTTACAATAACTCCTCTTGGCGACTTAACTATTGTGTTGGTGGTGAGgtataagagagttgattcc---aggttgtatttctatatatatgatcttcatt---ctaaggtgc-agtcata---taaattgttaat---gtgatgatttcag---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32940662|gb|CF045481.1|CF045481EST: TTATCTATAACAACTCGTTGTGGCGCCTAAATTATTGTGTTGGTGGTGAG GTCACTACAATGTATCATTTGGATCGCCCTATGTA
genomic: TTATCTATAACAACTCGTTGTGGCGCCTAAATTATTGTGTTGGTGGTGAGgtaaaaatag ... gtacttacagGTCACTACAATGTATCATTTGGATCGCCCTATGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCACGAGGTCAATGAGCGAGTGAGAACTGGAATTTGGGTTGGAGACTGCTTTATCTATAACAACTCGTTGTGGCGCCTAAATTATTGTGTTGGTGGTGAGgtaaaaatagtctactccttgaaaacgttttcttctgtttaagttctctatatggccactttgtgagtcacgacttcaattgtttacacagttataagctttgtacttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG