1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
ATGGTTGCAGGGAGATTTGTGAATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaagtgggattgatttcgaattgattgatagtcagtgctggaacagttaagtcgatacctttgctgacttgctaattctctgatgtag
species | Zea mays |
transcript | GRMZM2G092776_T05 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAG CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTEST: gi|149106666|gb|EE188560.2|EE188560
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
EST: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAG CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTEST: gi|6865375|gb|AW360725.1|AW360725
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
EST: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGCAACCTTCCGAGCAAG CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTEST: gi|6538838|gb|AW224977.1|AW224977
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
EST: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAG CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTEST: gi|89252188|gb|DY623974.1|DY623974
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
EST: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAG CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTEST: gi|74233198|gb|DT641112.1|DT641112
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
EST: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAG CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTACCTGGTGTEST: gi|6865071|gb|AW360421.1|AW360421
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
EST: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAG CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTEST: gi|148966542|gb|EE017566.2|EE017566
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
EST: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAG CCTGCTTACCCAAGGACTGGGTGGCATTCAGGCCATTGATGTGCCTGGTGTEST: gi|211299421|gb|FL314585.1|FL314585
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
EST: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAG CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTACCTGGTGTEST: gi|91877535|gb|EB407492.1|EB407492
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
EST: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAG CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTEST: gi|110960194|gb|EE180246.1|EE180246
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
EST: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAG CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGTTGCAGGGAGATTTGTGAATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaagtgggattgatttcgaattgattgatagtcagtgctggaacagttaagtcgatacctttgctgacttgctaattctctgatgtag
- - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG