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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccaggacccaaaaattcagcttggcatgcacggttacaagtaggcatacatgaaactatatacggcaacgtaacatttccgtcccactgcaaaatccag

Basic information

species Zea mays
transcript GRMZM2G090087_T02
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G090087_T03 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os05g45960.1 (Oryza sativa), 5'ss of exon 14
GATGTACTTGGGAGATCCGTTAACGGGACAACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccaggacccaaaaattcagcttggcatgcacggttacaagtaggcatacatgaaactatatacggcaacgtaacatttccgtcccactgcaaaatccag
|| ||||||||| |||| |||||||||||||| || ||||| || ||||| ||||| || || ||||||||||||||||||||||| | |||   ||| |  | | || |||   |  ||   |      |||  | ||       | | ||   ||  ||||      ||             
GAAGTACTTGGGCGATCAGTTAACGGGACAACATATGCCGGCATCCGAGCAAGGACAACTGGTGCTCCACAGAACCACTGgtgagctaagactagaaactggaacctgccatcttccttttttaaccaaaataggttaa------catgtcattttattatttgtaattcag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31997860|gb|CD661809.1|CD661809
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|32845913|gb|CD985594.1|CD985594
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|18383619|gb|BM416819.1|BM416819
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|28984490|gb|BQ539097.2|BQ539097
EST:     ACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|211120257|gb|FL200678.1|FL200678
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGT
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGT
EST: gi|67020094|gb|CO448843.1|CO448843
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|27769727|gb|CB042906.1|CB042906
EST:     ACCTACGCCGGAATTCGAGCGAGGACCCCGGGCGCTCCACAGAACCCCTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|28361615|gb|CB239971.1|CB239971
EST:     CCTACGCCGGAATTCGTAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: CCTACGCCGGAATTCG-AGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|6827469|gb|AW331112.1|AW331112
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|29576986|gb|CB617098.1|CB617098
EST:     GCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: GCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|27576018|gb|CA998712.1|CA998712
EST:     ACCTACGCCGGAATTCGAGCGAGGACCCCGGGCGCTCCCCAGAACCCCTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|30088118|gb|CB886323.1|CB886323
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|29544968|gb|CB605146.1|CB605146
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|18181309|gb|BM382519.1|BM382519
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|28361799|gb|CB240155.1|CB240155
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|28422820|gb|CB251998.1|CB251998
EST:     ACCTACGCCGGAATTCGAGCGAGGACCCCGGGCGCTCCCCAGAACCCCTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|31997861|gb|CD661810.1|CD661810
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|4966653|gb|AI691509.1|AI691509
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|29946900|gb|CB816380.1|CB816380
EST:     ACCTACGCCGGAATTCTAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGG-CGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|67025872|gb|CO454621.1|CO454621
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|29544562|gb|CB604942.1|CB604942
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|67023454|gb|CO452203.1|CO452203
EST:     ACCTACGCCG-AATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|37380563|gb|CF627102.1|CF627102
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|27521928|gb|CA989034.1|CA989034
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCCCTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|30306480|gb|CD001153.1|CD001153
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|60340281|gb|DN207254.1|DN207254
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|67018698|gb|CO447447.1|CO447447
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|211507628|gb|FL212141.1|FL212141
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|67014372|gb|CO443121.1|CO443121
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|211301793|gb|FL438947.1|FL438947
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|31558187|gb|CD527399.1|CD527399
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|60349947|gb|DN216920.1|DN216920
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|211342162|gb|FL434432.1|FL434432
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|71440457|gb|DR821507.1|DR821507
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
EST: gi|211507626|gb|FL212139.1|FL212139
EST:     ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTG                         GTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC
genomic: ACCTACGCCGGAATTCGAGCGAGGACCACGGGCGCTCCACAGAACCACTGgtgagccagg ... caaaatccagGTTTGGCCCGGCCGGTGATCCGCGAGGCGCAGGGATCGGGACTCCGGAAGC