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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTAGCTCGAGATGGGGAACAAACTGAGAAGGACAAATGGATCGAGCTTGTTCAGGAAATCGCATGCAGTTCCTCAGTAAAACGACCAAAAGATgtatgttctagactcttagagtatcctcatatatgttttggtgaaattgctgatgtaaaataattatatatgttgttaccacag

Basic information

species Zea mays
transcript GRMZM2G086093_T02
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086093_T03 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os03g05330.1 (Oryza sativa), 5'ss of exon 20
CTATTAGCTCGAGATGGGGAACAAACTGAGAAGGACAAATGGATCGAGCTTGTTCAGGAAATCGCATGCAGTTCCTCAGTAAAACGACCAAAAGATgtatgttctagactcttagagtatcctcatatatgttttggtgaaattgctgatgtaaaataattatatatgttgttaccacag-----------------
 ||||||| || ||||| ||||||||||||||||| || ||||| || |||||||||||  | ||||||||||||||||||||  | || ||||| |||   |||||  | ||      | ||  || ||  |  |    | | |      || | |||       | ||  ||  |                    
ATATTAGCCCGTGATGGCGAACAAACTGAGAAGGAGAAGTGGATTGATCTTGTTCAGGAGGTTGCATGCAGTTCCTCAGTAAAGAGGCCCAAAGAGgtaacctctagtattttcttac-tactagtacattctgagacctagtagaaagcatatattaagctatcttattactagtaagagcctaagaggaaatcaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31354548|gb|CD438905.1|CD438905
EST:     AGCTTGTTCAGGAAATCGCATGCAGTTCCTCAGTAAAACGACCAAAAGAT                         GTTCTGCCAACTTGCGTTATCTTGTGTAATGCTCTCAACCGAAATCAGAGG
genomic: AGCTTGTTCAGGAAATCGCATGCAGTTCCTCAGTAAAACGACCAAAAGATgtatgttcta ... gttaccacagGTTCTGCCAACTTGTGTTATCTTGTGTAATGCTCTCAACCGAAATCAGAGG