1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctgctctgtgctggattcaacacccaccgaatcctgttacgacttaccacaccacaccgatgcaatcggtatcttcctttttcatttcaactgatggtccaataacaaccaccaaaccctgcag
species | Zea mays |
transcript | GRMZM2G085747_T03 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: AGACGACGAAATTCGAAAAGGAATCCTCCTCTCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|4647288|gb|AI622363.1|AI622363
genomic: AGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGNCGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCNCCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|211281986|gb|FL018039.1|FL018039
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|86470645|gb|DY237015.1|DY237015
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|4730607|gb|AI649773.1|AI649773
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: GACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCCCCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|113701975|gb|EE679479.1|EE679479
genomic: GACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|211050465|gb|FL475129.1|FL475129
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|213169886|gb|FM184059.1|FM184059
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|74238357|gb|DT646271.1|DT646271
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|4647287|gb|AI622362.1|AI622362
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCNCCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|211326815|gb|FL454067.1|FL454067
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCMCAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCMCCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|50334197|gb|CO529323.1|CO529323
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|18163869|gb|BM333708.1|BM333708
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGTEST: gi|12971899|gb|BG267713.1|BG267713
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
EST: ATCACAGACGGCGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAG TATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
genomic: ATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctg ... aaccctgcagTATTAGGCACATCACCGCACGTGTCGGCGCAGCAGTCGTCCGTGCCGCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGGCATCATACATCACAGACGACGAAATTCGAAAAGGAATCCTCTTCCCTTCGGTCTCCAGgtgggctctgctctgtgctggattcaacacccaccgaatcctgttacgacttaccacaccacaccgatgcaatcggtatcttcctttttcatttcaactgatggtccaataacaaccaccaaaccctgcag
- - - - - - - - - - - - - - - - - AAGGAA