1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TTGAAGGGAATTCTGGATTTGGGCGTGGTGATTATTTCCTTGTTGGCTATGACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacactaacaatatttttttttcattaagctcacctgcaagctcttggactgctgtttgtaattttacccaaaaaatcggtgccttcatattagt...
species | Zea mays |
transcript | GRMZM2G085577_T01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|211014837|gb|FL417332.1|FL417332
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|67041226|gb|CO467481.1|CO467481
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|71301961|gb|DR787056.1|DR787056
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|76924589|gb|DV170028.1|DV170028
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|22490823|gb|BU050746.1|BU050746
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGACCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|32855932|gb|CD995613.1|CD995613
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGACCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGEST: gi|211355999|gb|FL410711.1|FL410711
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAG
EST: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|211215959|gb|FL334799.1|FL334799
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAA GGATAAGAAGGAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|60354851|gb|DN221824.1|DN221824
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|60354619|gb|DN221592.1|DN221592
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|16927694|gb|BM080763.1|BM080763
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|40335159|gb|CK369229.1|CK369229
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGACCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTTGGAGTGGEST: gi|60347330|gb|DN214303.1|DN214303
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|32866201|gb|CF005883.1|CF005883
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: CGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCCGGGAGTGGEST: gi|71301958|gb|DR787055.1|DR787055
genomic: CGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|60401276|gb|DN234083.1|DN234083
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|6636976|gb|AW261248.1|AW261248
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|211204436|gb|FL394622.1|FL394622
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGEST: gi|37380429|gb|CF627026.1|CF627026
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGG
EST: GACTTCCCAAGCTACATCGATGCACAGGACCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTTGGAGTGGEST: gi|60348694|gb|DN215667.1|DN215667
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|211359734|gb|FL344672.1|FL344672
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|19770331|gb|BQ035052.1|BQ035052
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|71767179|gb|DR965116.1|DR965116
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|60340741|gb|DN207714.1|DN207714
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|89106551|gb|DY576768.1|DY576768
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGACCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|19436465|gb|BM952875.1|BM952875
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGACCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGGEST: gi|211028797|gb|FL457634.1|FL457634
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
EST: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAA GGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
genomic: GACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacac ... cacatgacagGGATAAGAAGAAGTGGACCAAGATGTCCATCTTGAACACAGCTGGGAGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAAGGGAATTCTGGATTTGGGCGTGGTGATTATTTCCTTGTTGGCTATGACTTCCCAAGCTACATCGATGCACAGGATCGGGTGGATGCAGCCTACAAgtaagaacactaacaatatttttttttcattaagctcacctgcaagctcttggactgctgtttgtaattttacccaaaaaatcggtgccttcatattagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaaaaa