1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GTCTGAGTTCTACAAGATATTCTATAGCGTGTTTGACGACCAGTACGCTGCAATGGATGCGCTTCTGAACGGGAAGGAATTGTTTTCTTTTCAGgtacttgcacatttgtaaaatatttccatttcaatacatatcattaagggggtgtttgaatgcattaattggctaaaaaatgctagcggaattagctagc...
species | Zea mays |
transcript | GRMZM2G079468_T02 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: ACGCTGCAATGGATGCGCTTCTGAACGGGAAGGAATTGTTTTCTTTTCAG ATATTCCAGAATGTCCTGGACAAGTATCTCGGGGTGCATGTTGACCGACCCEST: gi|76289272|gb|DV028840.1|DV028840
genomic: ACGCTGCAATGGATGCGCTTCTGAACGGGAAGGAATTGTTTTCTTTTCAGgtacttgcac ... cctaatgcagATATTCCAGAATGTCCTGGACAAGTATCTCGGGGTGCATGTTGACCGACCC
EST: ACGCTGCAATGGATGCGCTTCTGAACGGGAAGGAATTGTTTTCTTTTCAG ATATTCCAGAATGTCCTGGACAAGTATCTCGGGGTGCATGTTGACCGACCCEST: gi|211266401|gb|FL281329.1|FL281329
genomic: ACGCTGCAATGGATGCGCTTCTGAACGGGAAGGAATTGTTTTCTTTTCAGgtacttgcac ... cctaatgcagATATTCCAGAATGTCCTGGACAAGTATCTCGGGGTGCATGTTGACCGACCC
EST: ACGCTGCAATGGATGCGCTTCTGAACGGGAAGGAATTGTTTTCTTTTCAG ATATTCCAGAATGTCCTGGACAAGTATCTCGGGGTGCATGTTGACCGACCC
genomic: ACGCTGCAATGGATGCGCTTCTGAACGGGAAGGAATTGTTTTCTTTTCAGgtacttgcac ... cctaatgcagATATTCCAGAATGTCCTGGACAAGTATCTCGGGGTGCATGTTGACCGACCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTGAGTTCTACAAGATATTCTATAGCGTGTTTGACGACCAGTACGCTGCAATGGATGCGCTTCTGAACGGGAAGGAATTGTTTTCTTTTCAGgtacttgcacatttgtaaaatatttccatttcaatacatatcattaagggggtgtttgaatgcattaattggctaaaaaatgctagcggaattagctagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaaaaaa