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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTATATGCTGTATTGCATCGACAAGAGGTTTTTGAGCCATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACTgtatgtgttattgtttattgcaacttttataagtacacattaatctattttccagattctcatcatattatattctgagtgtctgatag

Basic information

species Zea mays
transcript GRMZM2G078576_T01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078576_T04 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os01g56630.1 (Oryza sativa), 5'ss of exon 14
GTTGTATATGCTGTATTGCATCGACAAGAGGTTTTTGAGCCATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACTgtatgtgttattg--tttattgc---aacttt------tataagtacacattaatctatt-----ttccagattctcatcatattatattctgag--tgtctgatag
|| || |||||| | ||||||||||||||||| ||| ||||||| ||||| ||||| || || |||||| |||||||||| || ||||| |||||||||||||  ||| || |   |||||       || || |||| | ||||| | |     ||||        |||  |  || || |||   ||||||  ||
GTCGTGTATGCTATCTTGCATCGACAAGAGGTATTTCAGCCATTCAAAAACCATCCCCGCTTCAATGAATTGCTTGAGAATATTTACACAgtatgtgttattgcttttcttacatgaacttgccaaagtacaaatacagaataatcaactaaggtttcctttccacaatctcaccatgttatgaatttgtctggaag

upper sequence: GRMZM2G078576_T04 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA20G28880.1 (Glycine max), 5'ss of exon 13
GTTGTATATGCTGTATTGCATCGACAAGAGGTTTTTGAGCCATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACTgtatgtgttat---tgtttattgcaacttt---tataagtacacattaatctatt-----ttccagattctcatcatattatattctgagtgtctgatag--------------------------------------------------------------------------------
|| || |||||  || ||||  | || || || ||| ||||||| || |||||||||||||| ||||||||| |||| ||||| || ||||||||||| ||   |||||  |  || |     ||  |  | |   | | |  ||      |    | | | |    |  |  || || |       |||                                                                                
GTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAATCATCCACGTTTCAATGAACTGATTGATAACATTTATACTgtatgtgtcatatatgttttatttaaatgaaagtaccaaaatatgctgaccctttgcaatcttgtaacttttaaaggagcaagttttgtgctatctttagtcacattaatgaagcttgtctttgtataataaatcatgtttctcaagtgtgtgcaaaatgtatctattaaatatttacag

upper sequence: GRMZM2G078576_T04 (Zea mays), 5'ss of exon 14
lower sequence: GLYMA10G38920.2 (Glycine max), 5'ss of exon 14
GTTGTATATGCTGTATTGCATCGACAAGAGGTTTTTGAGCCATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACTgtatgtgttattgtttattgcaacttttataagtacacattaatctattttccagattctcatcatattatattctgagtgtctgatag------------
|| || |||||  || ||||  | || || || ||| ||||||| || ||||||||||| || ||||||||| |||| ||||| || ||||||||||| ||   |  ||   |  |||| | | | |  || ||    ||     |   |    | |||   | || |   | | |||             
GTAGTGTATGCAATAATGCACAGGCAGGAAGTCTTTCAGCCATTCAAGAATCATCCACGCTTCAATGAACTGATTGATAACATTTATACTgtatgtgtcatatatattttttaggtttaaatgca-attttgattcccttattttaaaatagagacatttagtcctcatattttaatatctataattttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26558732|gb|CA830967.1|CA830967
EST:     CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACT                         GTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA
genomic: CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACTgtatgtgtta ... tgtctgatagGTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA
EST: gi|87155515|gb|DY400304.1|DY400304
EST:     CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACT                         GTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA
genomic: CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACTgtatgtgtta ... tgtctgatagGTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA
EST: gi|78111274|gb|DV529671.1|DV529671
EST:     CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACT                         GTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA
genomic: CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACTgtatgtgtta ... tgtctgatagGTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA
EST: gi|24766669|gb|CA401816.1|CA401816
EST:     CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACT                         GTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA
genomic: CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACTgtatgtgtta ... tgtctgatagGTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA
EST: gi|22472877|gb|BU037357.1|BU037357
EST:     CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACT                         GTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA
genomic: CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACTgtatgtgtta ... tgtctgatagGTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA
EST: gi|149083574|gb|EE172908.2|EE172908
EST:     CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACT                         GTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA
genomic: CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACTgtatgtgtta ... tgtctgatagGTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA
EST: gi|93282383|gb|EB674647.1|EB674647
EST:     CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACT                         GTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA
genomic: CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACTgtatgtgtta ... tgtctgatagGTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA