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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGACAGAGAAACATCTTGTGCAGCGATCCAAAGTGCTATTTGGGAGGTCTGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAAgtattcaatcctcctcttgtttacccgtcgatgtattttggaccatatagccgtccttggtctagcatcacgaacaacccacagatcacaacgttcccttttgcaag

Basic information

species Zea mays
transcript GRMZM2G078458_T02
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078458_T04 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os06g03676.1 (Oryza sativa), 5'ss of exon 14
AAGACAGAGAAACATCTTGTGCAGCGATCCAAAGTGCTATTTGGGAGGTCTGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAAgtattcaatcctcctcttgtttacccgtcgatgtattttggaccatatagccgtccttggtctagcatcacgaacaacccacagatcacaacgttcccttttgcaag
 |   |  |||        ||  | | |||  |||||||| ||||||||| | |||||| | || |||||| |||||||||||||||||||  | ||||||||    | || |  ||||   |    |||||||    || ||| | ||    |  ||  | | || |    || ||   |  |||||   | ||| ||||||||||
GATCTAATGAAGATAGAGATGATGAGCTCCGGAGTGCTATATGGGAGGTCAGTGGTGATAATGGAGCACTGAGTTTGCTTGTGGATCTTCTTAGAGTCAAgtaacacacccacaacttgagaaat--tcgatgt-cagtgtacc-tgta----ttttttctatggcgttgtcaataatttattgatcaagcccttctcttttgcaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71330008|gb|DR801741.1|DR801741
EST:     TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAA                         AATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT
genomic: TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAAgtattcaatc ... cttttgcaagAATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT
EST: gi|211219812|gb|FL295368.1|FL295368
EST:     TGCGGTGATCAGGGTGCACTGGTTTTGCTTGTGGATCTTCTCGGGGTCAA                         AATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT
genomic: TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAAgtattcaatc ... cttttgcaagAATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT
EST: gi|78108130|gb|DV526548.1|DV526548
EST:     TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAA                         AATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT
genomic: TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAAgtattcaatc ... cttttgcaagAATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT
EST: gi|71298468|gb|DR785212.1|DR785212
EST:     TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAA                         AATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT
genomic: TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAAgtattcaatc ... cttttgcaagAATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT
EST: gi|86469372|gb|DY235742.1|DY235742
EST:     TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAA                         AATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT
genomic: TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAAgtattcaatc ... cttttgcaagAATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT
EST: gi|78122645|gb|DV541029.1|DV541029
EST:     TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAA                         AATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT
genomic: TGCGGTGATCAGGGTGCACTGGGTTTGCTTGTGGATCTTCTCGGGGTCAAgtattcaatc ... cttttgcaagAATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACT