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TGGAGTTGCCCTTCTTTATGCCACCAAGGAGCTTGACAAGATTAGCACAGCAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAGgtgggtttcttctagctaactatgtagcttcatgcatgtaggttatttgtctcctgagtcctgaatctaaaataattcatggatttctccag
species | Zea mays |
transcript | GRMZM2G074790_T03 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAG GCTCCCTTGATGACCATAGCAGAAAATGCTGGCATTGATGGAGCTATAGTCEST: gi|211267531|gb|FL446292.1|FL446292
genomic: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAGgtgggtttct ... atttctccagGCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTC
EST: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAG GCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTCEST: gi|67028320|gb|CO457069.1|CO457069
genomic: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAGgtgggtttct ... atttctccagGCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTC
EST: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAG GCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTCEST: gi|5006206|gb|AI712268.1|AI712268
genomic: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAGgtgggtttct ... atttctccagGCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTC
EST: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAG GCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTCEST: gi|31997582|gb|CD661667.1|CD661667
genomic: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAGgtgggtttct ... atttctccagGCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTC
EST: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAG GCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTCEST: gi|76911014|gb|DV164129.1|DV164129
genomic: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAGgtgggtttct ... atttctccagGCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTC
EST: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAG GCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTCEST: gi|113842163|gb|DW968596.1|DW968596
genomic: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAGgtgggtttct ... atttctccagGCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTC
EST: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAG GCTCCCTTGATGACCEST: gi|211181730|gb|FL012621.1|FL012621
genomic: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAGgtgggtttct ... atttctccagGCTCCCTTGATGACC
EST: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAG GCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTCEST: gi|211184128|gb|FL012625.1|FL012625
genomic: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAGgtgggtttct ... atttctccagGCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTC
EST: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAG GCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTCEST: gi|60394409|gb|DN227279.1|DN227279
genomic: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAGgtgggtttct ... atttctccagGCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTC
EST: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAG GCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTCEST: gi|24764724|gb|CA399887.1|CA399887
genomic: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAGgtgggtttct ... atttctccagGCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTC
EST: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAG GCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTCEST: gi|149072567|gb|EE044214.2|EE044214
genomic: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAGgtgggtttct ... atttctccagGCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTC
EST: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAG GCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTCEST: gi|74242337|gb|DT650251.1|DT650251
genomic: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAGgtgggtttct ... atttctccagGCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTC
EST: AAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAG GCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTCEST: gi|71759820|gb|DR957757.1|DR957757
genomic: AAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAGgtgggtttct ... atttctccagGCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTC
EST: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAG GCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTCEST: gi|78117876|gb|DV536263.1|DV536263
genomic: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAGgtgggtttct ... atttctccagGCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTC
EST: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAG GCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTCEST: gi|31352804|gb|CD437161.1|CD437161
genomic: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAGgtgggtttct ... atttctccagGCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTC
EST: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAG GCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTC
genomic: CAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAGgtgggtttct ... atttctccagGCTCCCTTGATGACCATAGCTGCAAATGCTGGCATTGATGGAGCTATAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGTTGCCCTTCTTTATGCCACCAAGGAGCTTGACAAGATTAGCACAGCAAACGAGGACGAAAAGATTGGAGTTCAAATTATCAAGAATTCTTTGAAGgtgggtttcttctagctaactatgtagcttcatgcatgtaggttatttgtctcctgagtcctgaatctaaaataattcatggatttctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG