1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGACAGCAAGGAGATTGCCAGGGCTCAGgttcccagtgctacatcatgatgttttcctatccgtgttataatccctgtatcagtctctgatggccttgcttcctgttgcag
species | Zea mays |
transcript | GRMZM2G073571_T01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: AAGAGGAACTGCTCGCGAACATCGACAGCAAGGAGATTGCCAGGGCTCAG AGAAAGAAGAAAACAATGTTCTGCTACTAGGACAACACCTGCTTCCGTGAGEST: gi|60401555|gb|DN234362.1|DN234362
genomic: AAGAGGAACTGCTCGCGAACATCGACAGCAAGGAGATTGCCAGGGCTCAGgttcccagtg ... cctgttgcagAGAAAGAAGAAAACAATGTTCTGCTACTAGGACAACACCTGCTTCCGTGAG
EST: AAGAGGAACTGCTCGCGAACATCGACAGCAAGGAGATTGCCAGGGCTCAG AGAAAGAAGAAAACAATGTTCTGCTACTAGGACAACACCTGCTTCCGTGAGEST: gi|3172014|gb|AJ006545.1|AJ006545
genomic: AAGAGGAACTGCTCGCGAACATCGACAGCAAGGAGATTGCCAGGGCTCAGgttcccagtg ... cctgttgcagAGAAAGAAGAAAACAATGTTCTGCTACTAGGACAACACCTGCTTCCGTGAG
EST: AAGAGGAACTGCTCGCGAACATCGACAGCAAGGAGATTGCCAGGGCTCAG AGAAAGAAGAAAACAATGTTCTGCTACTAGGACAACACCTGCTTCCGTGAGEST: gi|58029614|gb|CX725041.1|CX725041
genomic: AAGAGGAACTGCTCGCGAACATCGACAGCAAGGAGATTGCCAGGGCTCAGgttcccagtg ... cctgttgcagAGAAAGAAGAAAACAATGTTCTGCTACTAGGACAACACCTGCTTCCGTGAG
EST: AAGAGGAACTGCTCGCGAACATCGACAGCAAGGAGATTGCCAGGGCTCAG AGAAAGAAGAAAACAATGTTCTGCTACTAGGACAACACCTGCTTCCGTGAGEST: gi|20208502|gb|BQ134591.1|BQ134591
genomic: AAGAGGAACTGCTCGCGAACATCGACAGCAAGGAGATTGCCAGGGCTCAGgttcccagtg ... cctgttgcagAGAAAGAAGAAAACAATGTTCTGCTACTAGGACAACACCTGCTTCCGTGAG
EST: AAGAGGAACTGCTCGCGAACATCGACAGCAAGGAGATTGCCAGGGCTCAG AGAAAGAAGAAAACAATGTTCTGCTACTAGGACA-CACCTGCTTCCGTGAG
genomic: AAGAGGAACTGCTCGCGAACATCGACAGCAAGGAGATTGCCAGGGCTCAGgttcccagtg ... cctgttgcagAGAAAGAAGAAAACAATGTTCTGCTACTAGGACAACACCTGCTTCCGTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGACAGCAAGGAGATTGCCAGGGCTCAGgttcccagtgctacatcatgatgttttcctatccgtgttataatccctgtatcagtctctgatggccttgcttcctgttgcag
- - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT