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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCGATCTGCTCGCCAAGATGGTCGATCCTGCACTGGATGGGCTGTACCCTGCCAAGTCCCTCTCCCGTTTCGCCGACATAATCGCCATCTGCGTCCAGgtactgttggtgctgcatatgcagcataaactcctccgaactctcttcttttttgcaaagagccttgttctttcagaggtggactaagatggccttcttttttgcag

Basic information

species Zea mays
transcript GRMZM2G071573_T02
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G071573_T01 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os06g42800.1 (Oryza sativa), 5'ss of exon 15
CATCGATCTGCTCGCCAAGATGGTCGATCCTGCACTGGATGGGCTGTACCCTGCCAAGTCCCTCTCCCGTTTCGCCGACATAATCGCCATCTGCGTCCAGgtactgttggtg---ctgcatatgcagcataaact--cctccgaactctcttcttttttgcaaagagccttgttctttcagaggtggactaagatggccttcttttttgcag
|||||||  ||| ||||||||||| ||||| ||| |||||||| |||||||||| || || |||||||||||||| |||||||| ||  | || ||||||||| | || ||     | |  |     | |   |   | |  ||   | | | | || | |    |   |||||||| |||       |||| |||  |  ||         
CATCGATGCGCTTGCCAAGATGGTTGATCCAGCAATGGATGGGATGTACCCTGCAAAATCACTCTCCCGTTTCGCTGACATAATTGCATTGTGTGTCCAGgtaatattcgttatctttcgcacatttctttgtcctgcatatgactacccatttcttgttcgcccaaaattgttcttacagctt----ctaatatgaacaactc--------

upper sequence: GRMZM2G071573_T01 (Zea mays), 5'ss of exon 15
lower sequence: PP1S64_28V6.2 (Physcomitrella patens), 5'ss of exon 16
CATCGATCTGCTCGCCAAGATGGTCGATCCTGCACTGGATGGGCTGTACCCTGCCAAGTCCCTCTCCCGTTTCGCCGACATAATCGCCATCTGCGTCCAGgtactgttggtgctgcatatgcag-cataaactcctccgaactctcttcttttttgcaaagagccttgttctttcagaggtggactaagatggccttcttttttgcag---------------------------------------------------------------
 || |||   ||||| |  ||||| ||||| ||  | || ||    ||||||||||||||||||||||| || ||||||||  | ||| | || |||||||||  |  | |    || ||| || ||    ||  |  ||  ||            || | ||    |  |   ||    ||||  ||  |     |  |  |                                                                    
TATTGATGCACTCGCAAGAATGGTGGATCCAGCGTTAGAGGGTGCTTACCCTGCCAAGTCCCTCTCCCGGTTTGCCGACATCGTTGCCTTGTGTGTCCAGgtaacga-gttttctcacatgtagtcacctgcttgtatgatatcataatacccagtcagatagtaggggacaaccacctttggatcaaattcatactgctaatcatgataaattcattagttatatattattttaattctaatacaccttccatgtggtatttgtggacag