Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACATAGTTCGTATCAAGGTACTGCGTAATAAACCAGATCATGCTCTTGTTGAGATGGCTGACGGGTTGCAGGCTGAGCTAGCTGTGCATTATTTGAAGgtacattcttactcactgatatatgcattaagttacattcctattgttgcagttcacaatacctatctcattgcag

Basic information

species Zea mays
transcript GRMZM2G070113_T01
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G070113_T01 (Zea mays), 5'ss of exon 14
lower sequence: LOC_Os05g36120.1 (Oryza sativa), 5'ss of exon 14
AAACATAGTTCGTATCAAGGTACTGCGTAATAAACCAGATCATGCTCTTGTTGAGATGGCTGACGGGTTGCAGGCTGAGCTAGCTGTGCATTATTTGAAGgtacattcttactcactgatatat--------gcattaagttaca-----ttcctattgttgcagttcacaatacctatctcattgcag------------------------
 |||||||| || |||||  ||||||| || ||||||||||| || |||||||| |||||||| ||||| |||||||||||||||||||||||| |||||||||  || || || |   ||| |        ||||| ||| | |     || ||||| |   | |  |  ||  || | |    |||                         
GAACATAGTCCGAATCAAAATACTGCGCAACAAACCAGATCACGCCCTTGTTGAAATGGCTGATGGGTTTCAGGCTGAGCTAGCTGTGCATTATCTGAAGgtactctcatattcgcaattatctgcttcattgcattgagtaaaactaattttctattttcata-tgtatgattactgttttgccgcattttggatgccaatgtttttcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67016395|gb|CO445144.1|CO445144
EST:     TTGAGATGGCTGACGGGTTGCAGGCTGAGCTAGCTGTGCATTATTTGAAG                         GGGGCTATACTATTTGGGAAGAAGCTGGAAGTTAACTACTCANAGTACCCT
genomic: TTGAGATGGCTGACGGGTTGCAGGCTGAGCTAGCTGTGCATTATTTGAAGgtacattctt ... ctcattgcagGGGGCTATACTATTTGGGAAGAAGCTGGAAGTTAACTACTCAAAGTACCCT
EST: gi|211376275|gb|FL144037.1|FL144037
EST:     TTGAGATGGCTGACGGGTTGCAGGCTGAGCTAGCTGTGCATTATTTGAAG                         GGGGCTATACTATTTGGGAAGAAGCTGGAAGTTAACTACTCAAAGTACC
genomic: TTGAGATGGCTGACGGGTTGCAGGCTGAGCTAGCTGTGCATTATTTGAAGgtacattctt ... ctcattgcagGGGGCTATACTATTTGGGAAGAAGCTGGAAGTTAACTACTCAAAGTACC
EST: gi|30031872|gb|CB833723.1|CB833723
EST:     TTGAGATGGCTGACGGGTTGCAGGCTGAGCTAGCTGTGCATTATTTGAAG                         GGGGGCTATACTATTTG
genomic: TTGAGATGGCTGACGGGTTGCAGGCTGAGCTAGCTGTGCATTATTTGAAGgtacattctt ... ctcattgcagGGGG-CTATACTATTTG
EST: gi|61118021|gb|DN558982.1|DN558982
EST:     TTGAGATGGCTGACGGGTTGCAGGCTGAGCTAGCTGTGCATTATTTGAAG                         GGGGCTATACTATTTGGGAAGAAGCTGGAAGTTAACTACTCAAAGTACCCT
genomic: TTGAGATGGCTGACGGGTTGCAGGCTGAGCTAGCTGTGCATTATTTGAAGgtacattctt ... ctcattgcagGGGGCTATACTATTTGGGAAGAAGCTGGAAGTTAACTACTCAAAGTACCCT
EST: gi|113701814|gb|EE679318.1|EE679318
EST:     TTGAGATGGCTGACGGGTTGCAGGCTGAGCTAGCTGTGCATTATTTGAAG                         GGGGCTATACTATTTGGGAAGAAGCTGGAAGTTAACTACTCAAAGTACCCT
genomic: TTGAGATGGCTGACGGGTTGCAGGCTGAGCTAGCTGTGCATTATTTGAAGgtacattctt ... ctcattgcagGGGGCTATACTATTTGGGAAGAAGCTGGAAGTTAACTACTCAAAGTACCCT
EST: gi|211376276|gb|FL144038.1|FL144038
EST:     TGAGATGGCTGACGGGTCTGCACGCTGAGCTAGCTGTGCATTATTTGAAG                         GGGGCTATACTATTTCCGAAGAAGCTGGAAGTTAACTACTCAAAGTACCCT
genomic: TGAGATGGCTGACGGGT-TGCAGGCTGAGCTAGCTGTGCATTATTTGAAGgtacattctt ... ctcattgcagGGGGCTATACTATTTGGGAAGAAGCTGGAAGTTAACTACTCAAAGTACCCT
EST: gi|76011812|gb|DT938982.1|DT938982
EST:     TTGAGATGGCTGACGGGTTGCAGGCTGAGCTAGCTGTGCAT-ATTTGAAG                         GGGGCTATACTATTTGGGAAGAAGCTGGGAGTTA-CTACTCAAAGTACCCT
genomic: TTGAGATGGCTGACGGGTTGCAGGCTGAGCTAGCTGTGCATTATTTGAAGgtacattctt ... ctcattgcagGGGGCTATACTATTTGGGAAGAAGCTGGAAGTTAACTACTCAAAGTACCCT
EST: gi|76011811|gb|DT938981.1|DT938981
EST:     GCTAGCTGTGCATTATTTGAAG                         GGGGCTATACTA-TTGGGAAGAAGCTGGAAGTTAACTACTCAAAGTACCCT
genomic: GCTAGCTGTGCATTATTTGAAGgtacattctt ... ctcattgcagGGGGCTATACTATTTGGGAAGAAGCTGGAAGTTAACTACTCAAAGTACCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAACATAGTTCGTATCAAGGTACTGCGTAATAAACCAGATCATGCTCTTGTTGAGATGGCTGACGGGTTGCAGGCTGAGCTAGCTGTGCATTATTTGAAGgtacattcttactcactgatatatgcattaagttacattcctattgttgcagttcacaatacctatctcattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG