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GGGACAGGCGCCATGACCGTGATCGGGATAGGGATTATGACCGCTCCCGTGGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctgaataatactcctcgtgtcacaaattataagacatctcccaaattataaggcgtcttagcttttctagatgtatttttttattatgtataca...
species | Zea mays |
transcript | GRMZM2G069916_T01 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|30052552|gb|AI065841.2|AI065841
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|32833686|gb|CD973364.1|CD973364
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATAATACAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGGTTACACCATGCCTGACAGATTTAGGAGTEST: gi|211517868|gb|FL476359.1|FL476359
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATG-TTACACCATGCCTGACAGATTTAGGAGT
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|211445567|gb|FL157339.1|FL157339
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|88757903|gb|DY542044.1|DY542044
genomic: GACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCA-GGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|83278840|gb|DV942848.1|DV942848
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|211016391|gb|FL363397.1|FL363397
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCYACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|211445566|gb|FL157338.1|FL157338
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|149000972|gb|EE038212.2|EE038212
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATCCCTGACAGATTTAGGAGTAEST: gi|76920399|gb|DV168154.1|DV168154
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATCCCTGACAGATTTAGGAGTAEST: gi|71312970|gb|DR793007.1|DR793007
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|88756296|gb|DY540437.1|DY540437
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|88757902|gb|DY542043.1|DY542043
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATCCCTGACAGATTTAGGAGTA
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGACAGGCGCCATGACCGTGATCGGGATAGGGATTATGACCGCTCCCGTGGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctgaataatactcctcgtgtcacaaattataagacatctcccaaattataaggcgtcttagcttttctagatgtatttttttattatgtataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA